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Bathycoccus prasinos


Gene ID
Bathy08g04100
Locus
Bathy08g04100
Functional Description
thioredoxin
Gene Type
protein-coding gene
Contig
bathy_chrom_08
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
thioredoxin
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
n/a
Biological Process
1.
cell redox homeostasis

Protein Domains 


Domain IDDescriptionDatabase
IPR005746 Thioredoxin InterPro
IPR012335 Thioredoxin fold InterPro
IPR017936 Thioredoxin-like InterPro
IPR013766 Thioredoxin domain InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001420234.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 7e-41 | Bitscore: 170
Identities = 80/108 (74%), Positives = 94/108 (87%), Gaps = 2/108 (2%)
NCBI
Show Blast
XP_002509120.1 thioredoxin-like protein [Micromonas sp. RCC299]
Evalue: 3e-35 | Bitscore: 151
Identities = 71/107 (66%), Positives = 85/107 (79%), Gaps = 2/107 (2%)
NCBI
Show Blast
XP_003061642.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-34 | Bitscore: 149
Identities = 71/107 (66%), Positives = 83/107 (78%), Gaps = 2/107 (2%)
NCBI
Show Blast
XP_002971310.1 hypothetical protein SELMODRAFT_94818 [Selaginella moellendorffii]
Evalue: 3e-19 | Bitscore: 98
Identities = 44/82 (54%), Positives = 59/82 (72%), Gaps = 1/82 (1%)
NCBI
Show Blast
XP_002961497.1 hypothetical protein SELMODRAFT_77812 [Selaginella moellendorffii]
Evalue: 9e-19 | Bitscore: 96
Identities = 43/80 (54%), Positives = 58/80 (73%), Gaps = 1/80 (1%)
NCBI
Show Blast
ABK21872.1 unknown [Picea sitchensis]
Evalue: 6e-18 | Bitscore: 94
Identities = 44/88 (50%), Positives = 57/88 (65%), Gaps = 1/88 (1%)
NCBI
Show Blast
CBJ29912.1 flagellar outer arm dynein 14 kDa light chain LC5 [Ectocarpus siliculosus]
Evalue: 7e-16 | Bitscore: 87
Identities = 42/97 (43%), Positives = 63/97 (65%), Gaps = 2/97 (2%)
NCBI
Show Blast
XP_001780075.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 5e-15 | Bitscore: 84
Identities = 38/80 (48%), Positives = 54/80 (68%), Gaps = 1/80 (1%)
NCBI
Show Blast
XP_001781911.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 7e-15 | Bitscore: 83
Identities = 39/80 (49%), Positives = 55/80 (69%), Gaps = 1/80 (1%)
NCBI
Show Blast
XP_002287462.1 thioredoxin f [Thalassiosira pseudonana CCMP1335]
Evalue: 2e-14 | Bitscore: 82
Identities = 40/90 (44%), Positives = 59/90 (66%), Gaps = 2/90 (2%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy08g04100
Redo Blast
CDS Length
483 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy08g04100
Redo Blast
Protein Length
161 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a