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Bathycoccus prasinos


Gene ID
Bathy08g04030
Locus
Bathy08g04030
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_08
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
nucleus

Molecular Function
1.
DNA binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR004333 Transcription factor, SBP-box InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003059595.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-07 | Bitscore: 61
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (4%)
NCBI
Show Blast
EFN59857.1 hypothetical protein CHLNCDRAFT_133640 [Chlorella variabilis]
Evalue: 3e-05 | Bitscore: 54
Identities = 26/79 (33%), Positives = 42/79 (53%), Gaps = 3/79 (4%)
NCBI
Show Blast
ABR17971.1 unknown [Picea sitchensis]
Evalue: 9e-05 | Bitscore: 53
Identities = 29/86 (34%), Positives = 47/86 (55%), Gaps = 11/86 (13%)
NCBI
Show Blast
EFN53443.1 hypothetical protein CHLNCDRAFT_136693 [Chlorella variabilis]
Evalue: 0.0002 | Bitscore: 52
Identities = 20/69 (29%), Positives = 37/69 (54%), Gaps = 3/69 (4%)
NCBI
Show Blast
EFN56984.1 hypothetical protein CHLNCDRAFT_51260 [Chlorella variabilis]
Evalue: 0.0005 | Bitscore: 50
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
NCBI
Show Blast
XP_002504061.1 predicted protein [Micromonas sp. RCC299]
Evalue: 0.001 | Bitscore: 49
Identities = 24/69 (35%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
NCBI
Show Blast
ABM67299.1 SBP-domain protein 5 [Physcomitrella patens]
Evalue: 0.001 | Bitscore: 49
Identities = 30/104 (29%), Positives = 50/104 (48%), Gaps = 16/104 (15%)
NCBI
Show Blast
XP_002311811.1 predicted protein [Populus trichocarpa]
Evalue: 0.001 | Bitscore: 49
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
NCBI
Show Blast
XP_002991065.1 hypothetical protein SELMODRAFT_49859 [Selaginella moellendorffii]
Evalue: 0.002 | Bitscore: 48
Identities = 24/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (7%)
NCBI
Show Blast
ABD96886.1 hypothetical protein [Cleome spinosa]
Evalue: 0.002 | Bitscore: 48
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (7%)
NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy08g04030
Redo Blast
CDS Length
1350 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy08g04030
Redo Blast
Protein Length
450 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_6.clus266.Contig1 Support ModelY More Info