- Gene ID
- Bathy08g04030
- Locus
- Bathy08g04030
- Functional Description
- predicted protein
- Gene Type
- protein-coding gene
- Contig
- bathy_chrom_08
- Last Modified On
- 12 July 2011 21h39
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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pico-PLAZA - lookup this gene in the PLAZA resource |
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- predicted protein
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
nucleus
- Molecular Function
-
1.
DNA binding
- Biological Process
-
n/a
Protein Domains
Domain ID | Description | Database |
IPR004333 |
Transcription factor, SBP-box |
InterPro |
Protein Homologs
ProteinID | Description / BlastScore | Database | Actions |
XP_003059595.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-07 | Bitscore: 61 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (4%) |
NCBI |
Show Blast
|
EFN59857.1 |
hypothetical protein CHLNCDRAFT_133640 [Chlorella variabilis]
Evalue: 3e-05 | Bitscore: 54 Identities = 26/79 (33%), Positives = 42/79 (53%), Gaps = 3/79 (4%) |
NCBI |
Show Blast
|
ABR17971.1 |
unknown [Picea sitchensis]
Evalue: 9e-05 | Bitscore: 53 Identities = 29/86 (34%), Positives = 47/86 (55%), Gaps = 11/86 (13%) |
NCBI |
Show Blast
|
EFN53443.1 |
hypothetical protein CHLNCDRAFT_136693 [Chlorella variabilis]
Evalue: 0.0002 | Bitscore: 52 Identities = 20/69 (29%), Positives = 37/69 (54%), Gaps = 3/69 (4%) |
NCBI |
Show Blast
|
EFN56984.1 |
hypothetical protein CHLNCDRAFT_51260 [Chlorella variabilis]
Evalue: 0.0005 | Bitscore: 50 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 8/88 (9%) |
NCBI |
Show Blast
|
XP_002504061.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 0.001 | Bitscore: 49 Identities = 24/69 (35%), Positives = 34/69 (49%), Gaps = 3/69 (4%) |
NCBI |
Show Blast
|
ABM67299.1 |
SBP-domain protein 5 [Physcomitrella patens]
Evalue: 0.001 | Bitscore: 49 Identities = 30/104 (29%), Positives = 50/104 (48%), Gaps = 16/104 (15%) |
NCBI |
Show Blast
|
XP_002311811.1 |
predicted protein [Populus trichocarpa]
Evalue: 0.001 | Bitscore: 49 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) |
NCBI |
Show Blast
|
XP_002991065.1 |
hypothetical protein SELMODRAFT_49859 [Selaginella moellendorffii]
Evalue: 0.002 | Bitscore: 48 Identities = 24/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (7%) |
NCBI |
Show Blast
|
ABD96886.1 |
hypothetical protein [Cleome spinosa]
Evalue: 0.002 | Bitscore: 48 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (7%) |
NCBI |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
XP_003059595.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-07 | Bitscore: 61 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (4%) |
NCBI |
Show Blast
|
EFN59857.1 |
hypothetical protein CHLNCDRAFT_133640 [Chlorella variabilis]
Evalue: 3e-05 | Bitscore: 54 Identities = 26/79 (33%), Positives = 42/79 (53%), Gaps = 3/79 (4%) |
NCBI |
Show Blast
|
ABR17971.1 |
unknown [Picea sitchensis]
Evalue: 9e-05 | Bitscore: 53 Identities = 29/86 (34%), Positives = 47/86 (55%), Gaps = 11/86 (13%) |
NCBI |
Show Blast
|
EFN53443.1 |
hypothetical protein CHLNCDRAFT_136693 [Chlorella variabilis]
Evalue: 0.0002 | Bitscore: 52 Identities = 20/69 (29%), Positives = 37/69 (54%), Gaps = 3/69 (4%) |
NCBI |
Show Blast
|
EFN56984.1 |
hypothetical protein CHLNCDRAFT_51260 [Chlorella variabilis]
Evalue: 0.0005 | Bitscore: 50 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 8/88 (9%) |
NCBI |
Show Blast
|
XP_002504061.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 0.001 | Bitscore: 49 Identities = 24/69 (35%), Positives = 34/69 (49%), Gaps = 3/69 (4%) |
NCBI |
Show Blast
|
ABM67299.1 |
SBP-domain protein 5 [Physcomitrella patens]
Evalue: 0.001 | Bitscore: 49 Identities = 30/104 (29%), Positives = 50/104 (48%), Gaps = 16/104 (15%) |
NCBI |
Show Blast
|
XP_002311811.1 |
predicted protein [Populus trichocarpa]
Evalue: 0.001 | Bitscore: 49 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%) |
NCBI |
Show Blast
|
XP_002991065.1 |
hypothetical protein SELMODRAFT_49859 [Selaginella moellendorffii]
Evalue: 0.002 | Bitscore: 48 Identities = 24/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (7%) |
NCBI |
Show Blast
|
ABD96886.1 |
hypothetical protein [Cleome spinosa]
Evalue: 0.002 | Bitscore: 48 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (7%) |
NCBI |
Show Blast
|
No hits found against database Self with an e-value better than 1e-3. |
No hits found against database SwissP with an e-value better than 1e-3. |
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Alternative Models
- n/a
-
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
EST ID | SuperContig_6.clus266.Contig1 |
Support Model | Y |
More Info |
Mapping Location | 738148..739674 |
Strand - |
|