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Bathycoccus prasinos


Gene ID
Bathy08g03630
Locus
Bathy08g03630
Functional Description
VCBS
Gene Type
protein-coding gene
Contig
bathy_chrom_08
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
VCBS
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
IPR014741 Adaptor protein Cbl, EF hand-like InterPro
IPR013320 Concanavalin A-like lectin/glucanase, subgroup InterPro
IPR006558 LamG-like jellyroll fold InterPro
PTHR25100 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
ZP_04604577.1 hypothetical protein MCAG_00834 [Micromonospora sp. ATCC 39149]
Evalue: 4e-17 | Bitscore: 95
Identities = 78/248 (31%), Positives = 122/248 (49%), Gaps = 28/248 (11%)
NCBI
Show Blast
ADI18641.1 rtx toxins and related ca2+-binding proteins [uncultured Rhodospirillales bacterium HF4000_24M03]
Evalue: 7e-10 | Bitscore: 70
Identities = 63/198 (32%), Positives = 100/198 (51%), Gaps = 23/198 (12%)
NCBI
Show Blast
NP_864533.1 hypothetical protein RB1661 [Rhodopirellula baltica SH 1]
Evalue: 1e-08 | Bitscore: 67
Identities = 55/180 (31%), Positives = 76/180 (42%), Gaps = 32/180 (18%)
NCBI
Show Blast
YP_001953142.1 cell wall/surface repeat protein [Geobacter lovleyi SZ]
Evalue: 1e-08 | Bitscore: 66
Identities = 63/223 (28%), Positives = 94/223 (42%), Gaps = 33/223 (15%)
NCBI
Show Blast
ZP_01999548.1 VCBS [Beggiatoa sp. PS]
Evalue: 2e-08 | Bitscore: 66
Identities = 62/201 (31%), Positives = 91/201 (45%), Gaps = 31/201 (15%)
NCBI
Show Blast
ZP_01905861.1 VCBS [Plesiocystis pacifica SIR-1]
Evalue: 8e-08 | Bitscore: 63
Identities = 85/311 (27%), Positives = 127/311 (41%), Gaps = 55/311 (18%)
NCBI
Show Blast
ZP_07084667.1 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [Chryseobacterium gleum ATCC 35910]
Evalue: 9e-08 | Bitscore: 63
Identities = 41/118 (35%), Positives = 60/118 (51%), Gaps = 5/118 (4%)
NCBI
Show Blast
ZP_00055704.1 COG2931: RTX toxins and related Ca2+-binding proteins [Magnetospirillum magnetotacticum MS-1]
Evalue: 9e-08 | Bitscore: 63
Identities = 56/177 (32%), Positives = 83/177 (47%), Gaps = 9/177 (5%)
NCBI
Show Blast
ZP_02000165.1 VCBS [Beggiatoa sp. PS]
Evalue: 9e-08 | Bitscore: 63
Identities = 54/126 (43%), Positives = 69/126 (55%), Gaps = 21/126 (17%)
NCBI
Show Blast
ZP_01691552.1 conserved hypothetical protein [Microscilla marina ATCC 23134]
Evalue: 1e-07 | Bitscore: 63
Identities = 84/295 (28%), Positives = 129/295 (44%), Gaps = 33/295 (11%)
NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy08g03630
Redo Blast
CDS Length
2049 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy08g03630
Redo Blast
Protein Length
683 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

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EST IDSuperContig_6.clus97.Contig1 Support ModelN More Info
CommentEST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model
EST IDSuperContig_6.clus691.Contig1 Support ModelY More Info
EST IDSuperContig_6.clus615.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information