- Gene ID
- Bathy08g03630
- Locus
- Bathy08g03630
- Functional Description
- VCBS
- Gene Type
- protein-coding gene
- Contig
- bathy_chrom_08
- Last Modified On
- 12 July 2011 21h39
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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pico-PLAZA - lookup this gene in the PLAZA resource |
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- VCBS
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- n/a
-
Protein Domains
Domain ID | Description | Database |
IPR018247 |
EF-Hand 1, calcium-binding site |
InterPro |
IPR018249 |
EF-HAND 2 |
InterPro |
IPR014741 |
Adaptor protein Cbl, EF hand-like |
InterPro |
IPR013320 |
Concanavalin A-like lectin/glucanase, subgroup |
InterPro |
IPR006558 |
LamG-like jellyroll fold |
InterPro |
PTHR25100 |
FAMILY NOT NAMED |
HMMPanther |
Protein Homologs
ProteinID | Description / BlastScore | Database | Actions |
ZP_04604577.1 |
hypothetical protein MCAG_00834 [Micromonospora sp. ATCC 39149]
Evalue: 4e-17 | Bitscore: 95 Identities = 78/248 (31%), Positives = 122/248 (49%), Gaps = 28/248 (11%) |
NCBI |
Show Blast
|
ADI18641.1 |
rtx toxins and related ca2+-binding proteins [uncultured Rhodospirillales bacterium HF4000_24M03]
Evalue: 7e-10 | Bitscore: 70 Identities = 63/198 (32%), Positives = 100/198 (51%), Gaps = 23/198 (12%) |
NCBI |
Show Blast
|
NP_864533.1 |
hypothetical protein RB1661 [Rhodopirellula baltica SH 1]
Evalue: 1e-08 | Bitscore: 67 Identities = 55/180 (31%), Positives = 76/180 (42%), Gaps = 32/180 (18%) |
NCBI |
Show Blast
|
YP_001953142.1 |
cell wall/surface repeat protein [Geobacter lovleyi SZ]
Evalue: 1e-08 | Bitscore: 66 Identities = 63/223 (28%), Positives = 94/223 (42%), Gaps = 33/223 (15%) |
NCBI |
Show Blast
|
ZP_01999548.1 |
VCBS [Beggiatoa sp. PS]
Evalue: 2e-08 | Bitscore: 66 Identities = 62/201 (31%), Positives = 91/201 (45%), Gaps = 31/201 (15%) |
NCBI |
Show Blast
|
ZP_01905861.1 |
VCBS [Plesiocystis pacifica SIR-1]
Evalue: 8e-08 | Bitscore: 63 Identities = 85/311 (27%), Positives = 127/311 (41%), Gaps = 55/311 (18%) |
NCBI |
Show Blast
|
ZP_07084667.1 |
mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [Chryseobacterium gleum ATCC 35910]
Evalue: 9e-08 | Bitscore: 63 Identities = 41/118 (35%), Positives = 60/118 (51%), Gaps = 5/118 (4%) |
NCBI |
Show Blast
|
ZP_00055704.1 |
COG2931: RTX toxins and related Ca2+-binding proteins [Magnetospirillum magnetotacticum MS-1]
Evalue: 9e-08 | Bitscore: 63 Identities = 56/177 (32%), Positives = 83/177 (47%), Gaps = 9/177 (5%) |
NCBI |
Show Blast
|
ZP_02000165.1 |
VCBS [Beggiatoa sp. PS]
Evalue: 9e-08 | Bitscore: 63 Identities = 54/126 (43%), Positives = 69/126 (55%), Gaps = 21/126 (17%) |
NCBI |
Show Blast
|
ZP_01691552.1 |
conserved hypothetical protein [Microscilla marina ATCC 23134]
Evalue: 1e-07 | Bitscore: 63 Identities = 84/295 (28%), Positives = 129/295 (44%), Gaps = 33/295 (11%) |
NCBI |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
ZP_04604577.1 |
hypothetical protein MCAG_00834 [Micromonospora sp. ATCC 39149]
Evalue: 4e-17 | Bitscore: 95 Identities = 78/248 (31%), Positives = 122/248 (49%), Gaps = 28/248 (11%) |
NCBI |
Show Blast
|
ADI18641.1 |
rtx toxins and related ca2+-binding proteins [uncultured Rhodospirillales bacterium HF4000_24M03]
Evalue: 7e-10 | Bitscore: 70 Identities = 63/198 (32%), Positives = 100/198 (51%), Gaps = 23/198 (12%) |
NCBI |
Show Blast
|
NP_864533.1 |
hypothetical protein RB1661 [Rhodopirellula baltica SH 1]
Evalue: 1e-08 | Bitscore: 67 Identities = 55/180 (31%), Positives = 76/180 (42%), Gaps = 32/180 (18%) |
NCBI |
Show Blast
|
YP_001953142.1 |
cell wall/surface repeat protein [Geobacter lovleyi SZ]
Evalue: 1e-08 | Bitscore: 66 Identities = 63/223 (28%), Positives = 94/223 (42%), Gaps = 33/223 (15%) |
NCBI |
Show Blast
|
ZP_01999548.1 |
VCBS [Beggiatoa sp. PS]
Evalue: 2e-08 | Bitscore: 66 Identities = 62/201 (31%), Positives = 91/201 (45%), Gaps = 31/201 (15%) |
NCBI |
Show Blast
|
ZP_01905861.1 |
VCBS [Plesiocystis pacifica SIR-1]
Evalue: 8e-08 | Bitscore: 63 Identities = 85/311 (27%), Positives = 127/311 (41%), Gaps = 55/311 (18%) |
NCBI |
Show Blast
|
ZP_07084667.1 |
mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [Chryseobacterium gleum ATCC 35910]
Evalue: 9e-08 | Bitscore: 63 Identities = 41/118 (35%), Positives = 60/118 (51%), Gaps = 5/118 (4%) |
NCBI |
Show Blast
|
ZP_00055704.1 |
COG2931: RTX toxins and related Ca2+-binding proteins [Magnetospirillum magnetotacticum MS-1]
Evalue: 9e-08 | Bitscore: 63 Identities = 56/177 (32%), Positives = 83/177 (47%), Gaps = 9/177 (5%) |
NCBI |
Show Blast
|
ZP_02000165.1 |
VCBS [Beggiatoa sp. PS]
Evalue: 9e-08 | Bitscore: 63 Identities = 54/126 (43%), Positives = 69/126 (55%), Gaps = 21/126 (17%) |
NCBI |
Show Blast
|
ZP_01691552.1 |
conserved hypothetical protein [Microscilla marina ATCC 23134]
Evalue: 1e-07 | Bitscore: 63 Identities = 84/295 (28%), Positives = 129/295 (44%), Gaps = 33/295 (11%) |
NCBI |
Show Blast
|
No hits found against database Self with an e-value better than 1e-3. |
ProteinID | Description / BlastScore | Database | Actions |
Q80T32 |
Probable G-protein coupled receptor 133 OS=Mus musculus GN=Gpr133 PE=2 SV=2
Evalue: 8e-06 | Bitscore: 53 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 6/87 (6%) |
SwissP |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Alternative Models
- n/a
-
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
EST ID | SuperContig_6.clus97.Contig1 |
Support Model | N |
More Info |
Comment | EST is inconsistent with the given gene model. EST is mapped on the opposite strand of the predicted model |
Mapping Location | 670105..670391 |
Strand + |
EST ID | SuperContig_6.clus691.Contig1 |
Support Model | Y |
More Info |
Mapping Location | 670793..671309 |
Strand - |
EST ID | SuperContig_6.clus615.Contig1 |
Support Model | Y |
More Info |
Comment | EST is non-spliced and has no reliable strand information |
Mapping Location | 671988..672298 |
Strand + |
|