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Bathycoccus prasinos


Gene ID
Bathy08g02770
Locus
Bathy08g02770
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_08
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
IPR002048 Calcium-binding EF-hand InterPro
IPR011992 EF-hand-like domain InterPro
IPR018248 EF-hand InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001417293.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 8e-22 | Bitscore: 108
Identities = 84/277 (30%), Positives = 142/277 (51%), Gaps = 10/277 (4%)		 NCBI
Show Blast
XP_003078879.1 caltractin-like protein (ISS) [Ostreococcus tauri]
Evalue: 1e-18 | Bitscore: 98
Identities = 87/293 (30%), Positives = 154/293 (53%), Gaps = 13/293 (4%)		 NCBI
Show Blast
XP_001689473.1 predicted protein [Chlamydomonas reinhardtii]
Evalue: 1e-09 | Bitscore: 68
Identities = 73/285 (26%), Positives = 142/285 (50%), Gaps = 30/285 (11%)		 NCBI
Show Blast
EFN53750.1 hypothetical protein CHLNCDRAFT_53533 [Chlorella variabilis]
Evalue: 2e-09 | Bitscore: 67
Identities = 69/262 (26%), Positives = 119/262 (45%), Gaps = 26/262 (10%)		 NCBI
Show Blast
XP_003064371.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-06 | Bitscore: 58
Identities = 38/124 (31%), Positives = 57/124 (46%), Gaps = 27/124 (22%)		 NCBI
Show Blast
XP_002956688.1 hypothetical protein VOLCADRAFT_107336 [Volvox carteri f. nagariensis]
Evalue: 3e-06 | Bitscore: 57
Identities = 35/99 (35%), Positives = 53/99 (54%), Gaps = 6/99 (6%)		 NCBI
Show Blast
XP_003064370.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0002 | Bitscore: 50
Identities = 29/113 (26%), Positives = 60/113 (53%), Gaps = 1/113 (1%)		 NCBI
Show Blast
CAG03148.1 unnamed protein product [Tetraodon nigroviridis]
Evalue: 0.002 | Bitscore: 48
Identities = 31/84 (37%), Positives = 41/84 (49%), Gaps = 11/84 (13%)		 NCBI
Show Blast
NP_001079519.1 hypothetical protein LOC379206 [Xenopus laevis]
Evalue: 0.01 | Bitscore: 45
Identities = 33/95 (35%), Positives = 48/95 (51%), Gaps = 5/95 (5%)		 NCBI
Show Blast
XP_001442420.1 hypothetical protein [Paramecium tetraurelia strain d4-2]
Evalue: 0.011 | Bitscore: 45
Identities = 22/69 (32%), Positives = 39/69 (57%), Gaps = 0/69 (0%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy08g02770
Redo Blast
CDS Length
933 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy08g02770
Redo Blast
Protein Length
311 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a