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Bathycoccus prasinos


Gene ID
Bathy08g02420
Locus
Bathy08g02420
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_08
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR005746 Thioredoxin InterPro
IPR012335 Thioredoxin fold InterPro
IPR017936 Thioredoxin-like InterPro
PTHR18929 FAMILY NOT NAMED HMMPanther
IPR012336 Thioredoxin-like fold InterPro
IPR013766 Thioredoxin domain InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003060444.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-56 | Bitscore: 223
Identities = 108/176 (61%), Positives = 138/176 (78%), Gaps = 3/176 (2%)		 NCBI
Show Blast
XP_002504865.1 predicted protein [Micromonas sp. RCC299]
Evalue: 4e-54 | Bitscore: 216
Identities = 107/171 (63%), Positives = 131/171 (77%), Gaps = 2/171 (1%)		 NCBI
Show Blast
XP_003078843.1 Thioredoxin/protein disulfide isomerase (ISS) [Ostreococcus tauri]
Evalue: 2e-49 | Bitscore: 200
Identities = 97/179 (54%), Positives = 129/179 (72%), Gaps = 2/179 (1%)		 NCBI
Show Blast
XP_002293992.1 predicted protein [Thalassiosira pseudonana CCMP1335]
Evalue: 4e-29 | Bitscore: 132
Identities = 70/169 (41%), Positives = 107/169 (63%), Gaps = 3/169 (2%)		 NCBI
Show Blast
Q50KB1 Protein disulfide-isomerase-like protein EhSep2 OS=Emiliania huxleyi GN=SEP2 PE=1 SV=2
Evalue: 2e-29 | Bitscore: 129
Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 3/176 (1%)		 SwissP
Show Blast
XP_002293999.1 predicted protein [Thalassiosira pseudonana CCMP1335]
Evalue: 1e-27 | Bitscore: 127
Identities = 71/171 (42%), Positives = 107/171 (63%), Gaps = 3/171 (2%)		 NCBI
Show Blast
XP_002176586.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 2e-27 | Bitscore: 127
Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 5/177 (3%)		 NCBI
Show Blast
ABV22253.1 protein disulfide-isomerase-like protein EhSep2 precursor [Karlodinium micrum]
Evalue: 3e-26 | Bitscore: 123
Identities = 66/134 (49%), Positives = 91/134 (68%), Gaps = 6/134 (4%)		 NCBI
Show Blast
EGB07854.1 selenoprotein [Aureococcus anophagefferens]
Evalue: 8e-26 | Bitscore: 122
Identities = 68/177 (38%), Positives = 104/177 (59%), Gaps = 10/177 (6%)		 NCBI
Show Blast
XP_002293826.1 predicted protein [Thalassiosira pseudonana CCMP1335]
Evalue: 6e-24 | Bitscore: 115
Identities = 59/140 (42%), Positives = 91/140 (65%), Gaps = 2/140 (1%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy08g02420
Redo Blast
CDS Length
894 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy08g02420
Redo Blast
Protein Length
298 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_6.clus577.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information