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Bathycoccus prasinos


Gene ID
Bathy08g02240
Locus
Bathy08g02240
Functional Description
KpsF/GutQ family protein
Gene Type
protein-coding gene
Contig
bathy_chrom_08
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
KpsF/GutQ family protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR004800 KpsF/GutQ InterPro
G3DSA:3.10.580.10 no description Gene3D
IPR001347 Sugar isomerase (SIS) InterPro
G3DSA:3.40.50.10490 no description Gene3D
PTHR10937 GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING HMMPanther
IPR000644 Cystathionine beta-synthase, core InterPro
SSF53697 SIS domain superfamily

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001781077.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-110 | Bitscore: 402
Identities = 197/318 (62%), Positives = 247/318 (78%), Gaps = 3/318 (1%)		 NCBI
Show Blast
XP_002967382.1 hypothetical protein SELMODRAFT_86704 [Selaginella moellendorffii]
Evalue: 6e-108 | Bitscore: 395
Identities = 194/325 (60%), Positives = 246/325 (76%), Gaps = 0/325 (0%)		 NCBI
Show Blast
XP_002960330.1 hypothetical protein SELMODRAFT_75684 [Selaginella moellendorffii]
Evalue: 2e-107 | Bitscore: 393
Identities = 194/325 (60%), Positives = 245/325 (75%), Gaps = 0/325 (0%)		 NCBI
Show Blast
ADE75818.1 unknown [Picea sitchensis]
Evalue: 3e-105 | Bitscore: 386
Identities = 184/317 (58%), Positives = 244/317 (77%), Gaps = 0/317 (0%)		 NCBI
Show Blast
EFN54002.1 hypothetical protein CHLNCDRAFT_136008 [Chlorella variabilis]
Evalue: 1e-100 | Bitscore: 370
Identities = 189/344 (55%), Positives = 240/344 (70%), Gaps = 27/344 (8%)		 NCBI
Show Blast
XP_002532039.1 Polysialic acid capsule expression protein kpsF, putative [Ricinus communis]
Evalue: 9e-100 | Bitscore: 367
Identities = 179/314 (57%), Positives = 235/314 (75%), Gaps = 0/314 (0%)		 NCBI
Show Blast
XP_001773956.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 6e-99 | Bitscore: 365
Identities = 175/304 (58%), Positives = 225/304 (74%), Gaps = 0/304 (0%)		 NCBI
Show Blast
XP_002306858.1 predicted protein [Populus trichocarpa]
Evalue: 1e-98 | Bitscore: 364
Identities = 176/314 (56%), Positives = 234/314 (75%), Gaps = 0/314 (0%)		 NCBI
Show Blast
XP_002302040.1 predicted protein [Populus trichocarpa]
Evalue: 2e-98 | Bitscore: 363
Identities = 176/314 (56%), Positives = 233/314 (74%), Gaps = 0/314 (0%)		 NCBI
Show Blast
XP_002277616.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 6e-98 | Bitscore: 361
Identities = 183/320 (57%), Positives = 230/320 (72%), Gaps = 2/320 (1%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy08g02240
Redo Blast
CDS Length
978 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy08g02240
Redo Blast
Protein Length
326 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_6.clus143.Contig2 Support ModelY More Info