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Bathycoccus prasinos


Gene ID
Bathy08g01820
Locus
Bathy08g01820
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_08
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
calcium ion binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
PTHR12294 FAMILY NOT NAMED HMMPanther
IPR002048 Calcium-binding EF-hand InterPro
IPR011992 EF-hand-like domain InterPro
SSF47473 EF-hand superfamily

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003056146.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-33 | Bitscore: 147
Identities = 124/419 (30%), Positives = 194/419 (46%), Gaps = 109/419 (26%)		 NCBI
Show Blast
XP_002507300.1 predicted protein [Micromonas sp. RCC299]
Evalue: 5e-33 | Bitscore: 147
Identities = 127/393 (32%), Positives = 200/393 (51%), Gaps = 64/393 (16%)		 NCBI
Show Blast
XP_001783961.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-30 | Bitscore: 137
Identities = 107/391 (27%), Positives = 184/391 (47%), Gaps = 66/391 (17%)		 NCBI
Show Blast
XP_003074381.1 Ca2+ binding protein, contains EF-hand motifs (ISS) [Ostreococcus tauri]
Evalue: 5e-30 | Bitscore: 137
Identities = 114/389 (29%), Positives = 188/389 (48%), Gaps = 66/389 (17%)		 NCBI
Show Blast
EEC73584.1 hypothetical protein OsI_08048 [Oryza sativa Indica Group]
Evalue: 1e-26 | Bitscore: 125
Identities = 107/390 (27%), Positives = 175/390 (45%), Gaps = 68/390 (17%)		 NCBI
Show Blast
EEE57362.1 hypothetical protein OsJ_07508 [Oryza sativa Japonica Group]
Evalue: 2e-26 | Bitscore: 125
Identities = 106/390 (27%), Positives = 175/390 (45%), Gaps = 68/390 (17%)		 NCBI
Show Blast
NP_001047417.1 Os02g0613000 [Oryza sativa Japonica Group]
Evalue: 2e-26 | Bitscore: 125
Identities = 106/390 (27%), Positives = 175/390 (45%), Gaps = 68/390 (17%)		 NCBI
Show Blast
XP_001763005.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 8e-26 | Bitscore: 123
Identities = 101/393 (26%), Positives = 178/393 (45%), Gaps = 78/393 (20%)		 NCBI
Show Blast
NP_194934.1 calcium-binding EF hand family protein [Arabidopsis thaliana]
Evalue: 6e-25 | Bitscore: 120
Identities = 102/413 (25%), Positives = 186/413 (45%), Gaps = 70/413 (17%)		 NCBI
Show Blast
BAK07466.1 predicted protein [Hordeum vulgare subsp. vulgare]
Evalue: 2e-24 | Bitscore: 118
Identities = 106/400 (27%), Positives = 176/400 (44%), Gaps = 88/400 (22%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy08g01820
Redo Blast
CDS Length
1563 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy08g01820
Redo Blast
Protein Length
521 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_6.clus455.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information