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Bathycoccus prasinos


Gene ID
Bathy08g01030
Locus
Bathy08g01030
Functional Description
VCBS
Gene Type
protein-coding gene
Contig
bathy_chrom_08
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
VCBS
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
IPR013320 Concanavalin A-like lectin/glucanase, subgroup InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
ZP_01691552.1 conserved hypothetical protein [Microscilla marina ATCC 23134]
Evalue: 1e-16 | Bitscore: 92
Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 7/179 (4%)		 NCBI
Show Blast
ZP_04604577.1 hypothetical protein MCAG_00834 [Micromonospora sp. ATCC 39149]
Evalue: 4e-15 | Bitscore: 87
Identities = 62/208 (30%), Positives = 102/208 (49%), Gaps = 17/208 (8%)		 NCBI
Show Blast
CAM76811.1 HEMAGGLUTININ/HEMOLYSIN-RELATED PROTEIN [Magnetospirillum gryphiswaldense MSR-1]
Evalue: 8e-13 | Bitscore: 79
Identities = 61/186 (33%), Positives = 94/186 (51%), Gaps = 20/186 (11%)		 NCBI
Show Blast
ZP_01623702.1 hypothetical protein L8106_29050 [Lyngbya sp. PCC 8106]
Evalue: 1e-12 | Bitscore: 79
Identities = 60/210 (29%), Positives = 98/210 (47%), Gaps = 12/210 (6%)		 NCBI
Show Blast
EGF24533.1 protein containing Cadherin domain [Rhodopirellula baltica WH47]
Evalue: 3e-12 | Bitscore: 77
Identities = 59/203 (29%), Positives = 93/203 (46%), Gaps = 13/203 (6%)		 NCBI
Show Blast
NP_490410.1 hypothetical protein alr7304 [Nostoc sp. PCC 7120]
Evalue: 4e-12 | Bitscore: 77
Identities = 67/228 (29%), Positives = 100/228 (44%), Gaps = 28/228 (12%)		 NCBI
Show Blast
NP_864533.1 hypothetical protein RB1661 [Rhodopirellula baltica SH 1]
Evalue: 1e-11 | Bitscore: 75
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 13/203 (6%)		 NCBI
Show Blast
ZP_08220466.1 hypothetical protein SclaA2_31927 [Streptomyces clavuligerus ATCC 27064]
Evalue: 3e-10 | Bitscore: 70
Identities = 41/125 (33%), Positives = 65/125 (52%), Gaps = 12/125 (10%)		 NCBI
Show Blast
ZP_06775577.1 Hypothetical protein SCLAV_p0395 [Streptomyces clavuligerus ATCC 27064]
Evalue: 4e-10 | Bitscore: 70
Identities = 41/125 (33%), Positives = 65/125 (52%), Gaps = 12/125 (10%)		 NCBI
Show Blast
ADI18641.1 rtx toxins and related ca2+-binding proteins [uncultured Rhodospirillales bacterium HF4000_24M03]
Evalue: 4e-10 | Bitscore: 70
Identities = 52/209 (25%), Positives = 105/209 (50%), Gaps = 15/209 (7%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy08g01030
Redo Blast
CDS Length
1203 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy08g01030
Redo Blast
Protein Length
401 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_6.clus22.Contig1 Support ModelY More Info