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Bathycoccus prasinos


Gene ID
Bathy08g00110
Locus
Bathy08g00110
Functional Description
unknown protein
Gene Type
protein-coding gene
Contig
bathy_chrom_08
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
unknown protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR008554 Glutaredoxin-like InterPro
IPR012335 Thioredoxin fold InterPro
IPR012336 Thioredoxin-like fold InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003059826.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-10 | Bitscore: 68
Identities = 49/159 (31%), Positives = 71/159 (45%), Gaps = 23/159 (14%)
NCBI
Show Blast
XP_002504551.1 predicted protein [Micromonas sp. RCC299]
Evalue: 2e-07 | Bitscore: 59
Identities = 44/113 (39%), Positives = 56/113 (50%), Gaps = 18/113 (16%)
NCBI
Show Blast
YP_001515750.1 glutaredoxin 2 [Acaryochloris marina MBIC11017]
Evalue: 7e-07 | Bitscore: 57
Identities = 39/116 (34%), Positives = 62/116 (53%), Gaps = 29/116 (25%)
NCBI
Show Blast
YP_723632.1 glutaredoxin 2 [Trichodesmium erythraeum IMS101]
Evalue: 8e-07 | Bitscore: 57
Identities = 38/116 (33%), Positives = 59/116 (51%), Gaps = 27/116 (23%)
NCBI
Show Blast
XP_001421537.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-06 | Bitscore: 55
Identities = 39/123 (32%), Positives = 63/123 (51%), Gaps = 20/123 (16%)
NCBI
Show Blast
ZP_05025239.1 Glutaredoxin domain family protein [Microcoleus chthonoplastes PCC 7420]
Evalue: 3e-06 | Bitscore: 55
Identities = 37/120 (31%), Positives = 59/120 (49%), Gaps = 34/120 (28%)
NCBI
Show Blast
YP_001865991.1 glutaredoxin 2 [Nostoc punctiforme PCC 73102]
Evalue: 3e-06 | Bitscore: 55
Identities = 37/116 (32%), Positives = 58/116 (50%), Gaps = 29/116 (25%)
NCBI
Show Blast
ZP_06305074.1 Glutaredoxin 2 [Raphidiopsis brookii D9]
Evalue: 6e-06 | Bitscore: 55
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 19/109 (17%)
NCBI
Show Blast
ZP_06307838.1 Glutaredoxin 2 [Cylindrospermopsis raciborskii CS-505]
Evalue: 6e-06 | Bitscore: 54
Identities = 36/109 (33%), Positives = 62/109 (57%), Gaps = 21/109 (19%)
NCBI
Show Blast
YP_321667.1 glutaredoxin 2 [Anabaena variabilis ATCC 29413]
Evalue: 1e-05 | Bitscore: 53
Identities = 40/124 (32%), Positives = 57/124 (46%), Gaps = 32/124 (26%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy08g00110
Redo Blast
CDS Length
588 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy08g00110
Redo Blast
Protein Length
196 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a