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Bathycoccus prasinos


Gene ID
Bathy07g04790
Locus
Bathy07g04790
Functional Description
DSBA oxidoreductase
Gene Type
protein-coding gene
Contig
bathy_chrom_07
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
DSBA oxidoreductase
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 

n/a
 

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003060081.1 DSBA oxidoreductase [Micromonas pusilla CCMP1545]
Evalue: 1e-30 | Bitscore: 136
Identities = 72/172 (42%), Positives = 100/172 (58%), Gaps = 14/172 (8%)
NCBI
Show Blast
XP_002506598.1 DSBA oxidoreductase [Micromonas sp. RCC299]
Evalue: 4e-27 | Bitscore: 124
Identities = 65/178 (37%), Positives = 100/178 (56%), Gaps = 15/178 (8%)
NCBI
Show Blast
XP_001420888.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-22 | Bitscore: 110
Identities = 68/185 (37%), Positives = 97/185 (52%), Gaps = 18/185 (10%)
NCBI
Show Blast
XP_003082500.1 Chromatin remodeling factor subunit and related transcription factors (ISS) [Ostreococcus tauri]
Evalue: 3e-21 | Bitscore: 105
Identities = 60/150 (40%), Positives = 79/150 (53%), Gaps = 15/150 (10%)
NCBI
Show Blast
ACU16957.1 unknown [Glycine max]
Evalue: 3e-17 | Bitscore: 92
Identities = 59/180 (33%), Positives = 93/180 (52%), Gaps = 23/180 (13%)
NCBI
Show Blast
XP_002464261.1 hypothetical protein SORBIDRAFT_01g015110 [Sorghum bicolor]
Evalue: 5e-17 | Bitscore: 91
Identities = 59/180 (33%), Positives = 88/180 (49%), Gaps = 22/180 (12%)
NCBI
Show Blast
ACR34327.1 unknown [Zea mays]
Evalue: 3e-16 | Bitscore: 89
Identities = 57/180 (32%), Positives = 88/180 (49%), Gaps = 22/180 (12%)
NCBI
Show Blast
XP_001758893.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 4e-16 | Bitscore: 88
Identities = 57/180 (32%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
NCBI
Show Blast
NP_001132674.1 hypothetical protein LOC100194152 [Zea mays]
Evalue: 5e-16 | Bitscore: 88
Identities = 57/180 (32%), Positives = 88/180 (49%), Gaps = 22/180 (12%)
NCBI
Show Blast
XP_002525922.1 protein disulfide oxidoreductase, putative [Ricinus communis]
Evalue: 1e-15 | Bitscore: 87
Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 23/180 (13%)
NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy07g04790
Redo Blast
CDS Length
576 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy07g04790
Redo Blast
Protein Length
192 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_5.clus40.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information