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Bathycoccus prasinos


Gene ID
Bathy07g04770
Locus
Bathy07g04770
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_07
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
IPR017933 Glutathione S-transferase/chloride channel, C-terminal InterPro
IPR012336 Thioredoxin-like fold InterPro
PTHR11260 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003083492.1 Intracellular Cl-channel CLIC, contains GST domain (ISS) [Ostreococcus tauri]
Evalue: 3e-46 | Bitscore: 190
Identities = 102/239 (43%), Positives = 142/239 (59%), Gaps = 7/239 (3%)		 NCBI
Show Blast
XP_002503094.1 predicted protein [Micromonas sp. RCC299]
Evalue: 1e-35 | Bitscore: 155
Identities = 111/355 (31%), Positives = 177/355 (50%), Gaps = 19/355 (5%)		 NCBI
Show Blast
XP_003061109.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-35 | Bitscore: 153
Identities = 104/287 (36%), Positives = 147/287 (51%), Gaps = 34/287 (12%)		 NCBI
Show Blast
EFN54900.1 hypothetical protein CHLNCDRAFT_135021 [Chlorella variabilis]
Evalue: 8e-22 | Bitscore: 109
Identities = 73/216 (34%), Positives = 111/216 (51%), Gaps = 8/216 (4%)		 NCBI
Show Blast
XP_001567055.1 thiol-dependent reductase 1 [Leishmania braziliensis MHOM/BR/75/M2904]
Evalue: 7e-14 | Bitscore: 82
Identities = 72/219 (33%), Positives = 103/219 (47%), Gaps = 27/219 (12%)		 NCBI
Show Blast
EFN58225.1 hypothetical protein CHLNCDRAFT_142109 [Chlorella variabilis]
Evalue: 7e-14 | Bitscore: 82
Identities = 73/246 (30%), Positives = 111/246 (45%), Gaps = 23/246 (9%)		 NCBI
Show Blast
EFQ87342.1 hypothetical protein PTT_17206 [Pyrenophora teres f. teres 0-1]
Evalue: 9e-13 | Bitscore: 79
Identities = 69/259 (27%), Positives = 114/259 (44%), Gaps = 37/259 (14%)		 NCBI
Show Blast
XP_001931086.1 conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP]
Evalue: 3e-12 | Bitscore: 77
Identities = 70/259 (27%), Positives = 112/259 (43%), Gaps = 37/259 (14%)		 NCBI
Show Blast
YP_001611239.1 hypothetical protein sce0602 [Sorangium cellulosum 'So ce 56']
Evalue: 5e-11 | Bitscore: 73
Identities = 67/243 (28%), Positives = 107/243 (44%), Gaps = 30/243 (12%)		 NCBI
Show Blast
XP_001468111.1 thiol-dependent reductase 1 [Leishmania infantum]
Evalue: 7e-11 | Bitscore: 72
Identities = 60/192 (31%), Positives = 83/192 (43%), Gaps = 22/192 (11%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy07g04770
Redo Blast
CDS Length
1125 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy07g04770
Redo Blast
Protein Length
375 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_5.clus243.Contig2 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_5.clus243.Contig1 Support ModelY More Info