Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy07g04170
Locus
Bathy07g04170
Functional Description
unknown protein
Gene Type
protein-coding gene
Contig
bathy_chrom_07
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
unknown protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
n/a
Biological Process
1.
cell redox homeostasis

Protein Domains 


Domain IDDescriptionDatabase
IPR005746 Thioredoxin InterPro
IPR012335 Thioredoxin fold InterPro
IPR018997 PUB domain InterPro
IPR017936 Thioredoxin-like InterPro
IPR013766 Thioredoxin domain InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
YP_003689326.1 Thioredoxin [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1]
Evalue: 2e-05 | Bitscore: 54
Identities = 31/80 (39%), Positives = 45/80 (56%), Gaps = 7/80 (9%)		 NCBI
Show Blast
XP_001829191.2 hypothetical protein CC1G_01871 [Coprinopsis cinerea okayama7#130]
Evalue: 0.0001 | Bitscore: 52
Identities = 38/93 (41%), Positives = 51/93 (55%), Gaps = 10/93 (11%)		 NCBI
Show Blast
CAG25528.1 thioredoxin [Suberites ficus]
Evalue: 0.0001 | Bitscore: 52
Identities = 32/92 (35%), Positives = 49/92 (53%), Gaps = 11/92 (12%)		 NCBI
Show Blast
XP_003037417.1 hypothetical protein SCHCODRAFT_13623 [Schizophyllum commune H4-8]
Evalue: 0.0001 | Bitscore: 51
Identities = 32/89 (36%), Positives = 46/89 (52%), Gaps = 11/89 (12%)		 NCBI
Show Blast
XP_003064472.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0004 | Bitscore: 50
Identities = 23/64 (36%), Positives = 39/64 (61%), Gaps = 4/64 (6%)		 NCBI
Show Blast
ZP_05042421.1 Thioredoxin domain protein [Alcanivorax sp. DG881]
Evalue: 0.0006 | Bitscore: 49
Identities = 33/91 (36%), Positives = 49/91 (54%), Gaps = 11/91 (12%)		 NCBI
Show Blast
YP_385597.1 thioredoxin-related protein [Geobacter metallireducens GS-15]
Evalue: 0.0007 | Bitscore: 49
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 6/93 (6%)		 NCBI
Show Blast
CBX90746.1 similar to disulfide isomerase [Leptosphaeria maculans]
Evalue: 0.0009 | Bitscore: 49
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 12/106 (11%)		 NCBI
Show Blast
YP_004151959.1 Thioredoxin domain-containing protein [Thermovibrio ammonificans HB-1]
Evalue: 0.002 | Bitscore: 47
Identities = 32/91 (35%), Positives = 46/91 (51%), Gaps = 12/91 (13%)		 NCBI
Show Blast
XP_002576741.1 thioredoxin 2 [Schistosoma mansoni]
Evalue: 0.003 | Bitscore: 47
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 11/94 (12%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy07g04170
Redo Blast
CDS Length
978 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy07g04170
Redo Blast
Protein Length
326 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a