- Gene ID
- Bathy07g03970
- Locus
- Bathy07g03970
- Functional Description
- formamidopyrimidine-DNA glycosylase
- Gene Type
- protein-coding gene
- Contig
- bathy_chrom_07
- Last Modified On
- 12 July 2011 21h39
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- formamidopyrimidine-DNA glycosylase
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
1.
damaged DNA binding
2.
DNA-(apurinic or apyrimidinic site) endonuclease activity
3.
zinc ion binding
4.
hydrolase activity, hydrolyzing N-glycosyl compounds
- Biological Process
-
1.
base-excision repair
Protein Domains
| Domain ID | Description | Database |
|---|
|
G3DSA:1.10.8.50 |
no description |
Gene3D |
|
IPR010979 |
Ribosomal protein S13-like, H2TH |
InterPro |
|
IPR012319 |
DNA glycosylase/AP lyase, catalytic domain |
InterPro |
|
IPR015886 |
DNA glycosylase/AP lyase, H2TH DNA-binding |
InterPro |
|
PTHR22993 |
FAMILY NOT NAMED |
HMMPanther |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| XP_002503637.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 1e-70 | Bitscore: 271
Identities = 139/274 (51%), Positives = 173/274 (63%), Gaps = 6/274 (2%) |
NCBI |
Show Blast
|
| XP_003055501.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 9e-66 | Bitscore: 255
Identities = 137/289 (47%), Positives = 174/289 (60%), Gaps = 15/289 (5%) |
NCBI |
Show Blast
|
| XP_001420761.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-64 | Bitscore: 250
Identities = 125/287 (44%), Positives = 184/287 (64%), Gaps = 13/287 (5%) |
NCBI |
Show Blast
|
| CBJ48484.1 |
conserved unknown protein [Ectocarpus siliculosus]
Evalue: 1e-60 | Bitscore: 238
Identities = 135/311 (43%), Positives = 184/311 (59%), Gaps = 17/311 (5%) |
NCBI |
Show Blast
|
| XP_002954128.1 |
hypothetical protein VOLCADRAFT_42929 [Volvox carteri f. nagariensis]
Evalue: 5e-56 | Bitscore: 222
Identities = 122/294 (41%), Positives = 170/294 (58%), Gaps = 18/294 (6%) |
NCBI |
Show Blast
|
| XP_002263635.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 6e-55 | Bitscore: 219
Identities = 119/286 (42%), Positives = 165/286 (58%), Gaps = 10/286 (3%) |
NCBI |
Show Blast
|
| XP_001782579.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 6e-55 | Bitscore: 219
Identities = 116/286 (41%), Positives = 168/286 (59%), Gaps = 11/286 (4%) |
NCBI |
Show Blast
|
| AAC97952.1 |
putative formamidopyrimidine-DNA glycosylase 1 [Arabidopsis thaliana]
Evalue: 2e-54 | Bitscore: 217
Identities = 118/286 (41%), Positives = 165/286 (58%), Gaps = 10/286 (3%) |
NCBI |
Show Blast
|
| NP_564608.1 |
ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1); DNA N-glycosylase [Arabidopsis thaliana]
Evalue: 8e-54 | Bitscore: 215
Identities = 118/286 (41%), Positives = 164/286 (57%), Gaps = 10/286 (3%) |
NCBI |
Show Blast
|
| XP_002969230.1 |
hypothetical protein SELMODRAFT_170576 [Selaginella moellendorffii]
Evalue: 9e-54 | Bitscore: 215
Identities = 118/266 (44%), Positives = 160/266 (60%), Gaps = 12/266 (5%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| XP_002503637.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 1e-70 | Bitscore: 271
Identities = 139/274 (51%), Positives = 173/274 (63%), Gaps = 6/274 (2%) |
NCBI |
Show Blast
|
| XP_003055501.1 |
predicted protein [Micromonas pusilla CCMP1545]
Evalue: 9e-66 | Bitscore: 255
Identities = 137/289 (47%), Positives = 174/289 (60%), Gaps = 15/289 (5%) |
NCBI |
Show Blast
|
| XP_001420761.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-64 | Bitscore: 250
Identities = 125/287 (44%), Positives = 184/287 (64%), Gaps = 13/287 (5%) |
NCBI |
Show Blast
|
| CBJ48484.1 |
conserved unknown protein [Ectocarpus siliculosus]
Evalue: 1e-60 | Bitscore: 238
Identities = 135/311 (43%), Positives = 184/311 (59%), Gaps = 17/311 (5%) |
NCBI |
Show Blast
|
| XP_002954128.1 |
hypothetical protein VOLCADRAFT_42929 [Volvox carteri f. nagariensis]
Evalue: 5e-56 | Bitscore: 222
Identities = 122/294 (41%), Positives = 170/294 (58%), Gaps = 18/294 (6%) |
NCBI |
Show Blast
|
| XP_002263635.1 |
PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 6e-55 | Bitscore: 219
Identities = 119/286 (42%), Positives = 165/286 (58%), Gaps = 10/286 (3%) |
NCBI |
Show Blast
|
| XP_001782579.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 6e-55 | Bitscore: 219
Identities = 116/286 (41%), Positives = 168/286 (59%), Gaps = 11/286 (4%) |
NCBI |
Show Blast
|
| AAC97952.1 |
putative formamidopyrimidine-DNA glycosylase 1 [Arabidopsis thaliana]
Evalue: 2e-54 | Bitscore: 217
Identities = 118/286 (41%), Positives = 165/286 (58%), Gaps = 10/286 (3%) |
NCBI |
Show Blast
|
| NP_564608.1 |
ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1); DNA N-glycosylase [Arabidopsis thaliana]
Evalue: 8e-54 | Bitscore: 215
Identities = 118/286 (41%), Positives = 164/286 (57%), Gaps = 10/286 (3%) |
NCBI |
Show Blast
|
| XP_002969230.1 |
hypothetical protein SELMODRAFT_170576 [Selaginella moellendorffii]
Evalue: 9e-54 | Bitscore: 215
Identities = 118/266 (44%), Positives = 160/266 (60%), Gaps = 12/266 (5%) |
NCBI |
Show Blast
|
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q03GC2 |
Formamidopyrimidine-DNA glycosylase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=mutM PE=3 SV=1
Evalue: 5e-24 | Bitscore: 112
Identities = 82/266 (30%), Positives = 131/266 (49%), Gaps = 33/266 (12%) |
SwissP |
Show Blast
|
| Q602J1 |
Formamidopyrimidine-DNA glycosylase OS=Methylococcus capsulatus GN=mutM PE=3 SV=3
Evalue: 1e-20 | Bitscore: 101
Identities = 72/242 (29%), Positives = 114/242 (47%), Gaps = 22/242 (9%) |
SwissP |
Show Blast
|
| B8FU83 |
Formamidopyrimidine-DNA glycosylase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=mutM PE=3 SV=1
Evalue: 4e-20 | Bitscore: 99
Identities = 86/248 (34%), Positives = 121/248 (48%), Gaps = 32/248 (12%) |
SwissP |
Show Blast
|
| Q24XW2 |
Formamidopyrimidine-DNA glycosylase OS=Desulfitobacterium hafniense (strain Y51) GN=mutM PE=3 SV=1
Evalue: 4e-20 | Bitscore: 99
Identities = 86/248 (34%), Positives = 121/248 (48%), Gaps = 32/248 (12%) |
SwissP |
Show Blast
|
| Q6KHS0 |
Formamidopyrimidine-DNA glycosylase OS=Mycoplasma mobile GN=mutM PE=3 SV=3
Evalue: 4e-20 | Bitscore: 99
Identities = 86/301 (28%), Positives = 136/301 (45%), Gaps = 45/301 (14%) |
SwissP |
Show Blast
|
| C4L470 |
Formamidopyrimidine-DNA glycosylase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=mutM PE=3 SV=1
Evalue: 7e-20 | Bitscore: 98
Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 33/297 (11%) |
SwissP |
Show Blast
|
| P19210 |
Formamidopyrimidine-DNA glycosylase OS=Bacillus firmus GN=mutM PE=3 SV=3
Evalue: 2e-19 | Bitscore: 97
Identities = 87/291 (29%), Positives = 135/291 (46%), Gaps = 35/291 (12%) |
SwissP |
Show Blast
|
| Q21EE3 |
Formamidopyrimidine-DNA glycosylase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mutM PE=3 SV=1
Evalue: 2e-19 | Bitscore: 97
Identities = 87/297 (29%), Positives = 128/297 (43%), Gaps = 38/297 (12%) |
SwissP |
Show Blast
|
| A5D0T6 |
Formamidopyrimidine-DNA glycosylase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
Evalue: 9e-19 | Bitscore: 94
Identities = 84/298 (28%), Positives = 133/298 (44%), Gaps = 37/298 (12%) |
SwissP |
Show Blast
|
| Q5FN17 |
Formamidopyrimidine-DNA glycosylase OS=Gluconobacter oxydans GN=mutM PE=3 SV=3
Evalue: 2e-18 | Bitscore: 94
Identities = 76/252 (30%), Positives = 109/252 (43%), Gaps = 38/252 (15%) |
SwissP |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- +
- Structure Quality
- 2
Alternative Models
- n/a
-
Protein
Associated ESTs/cDNAs
- n/a
-
|
