Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy07g03480
Locus
Bathy07g03480
Functional Description
unnamed protein product
Gene Type
protein-coding gene
Contig
bathy_chrom_07
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
unnamed protein product
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
n/a
Biological Process
1.
cell redox homeostasis

Protein Domains 


Domain IDDescriptionDatabase
IPR005746 Thioredoxin InterPro
IPR012335 Thioredoxin fold InterPro
IPR017936 Thioredoxin-like InterPro
PTHR18929 FAMILY NOT NAMED HMMPanther
IPR013766 Thioredoxin domain InterPro
IPR012336 Thioredoxin-like fold InterPro
IPR017937 Thioredoxin, conserved site InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002957079.1 protein disulfide isomerase 1 [Volvox carteri f. nagariensis]
Evalue: 4e-70 | Bitscore: 270
Identities = 182/516 (35%), Positives = 271/516 (53%), Gaps = 68/516 (13%)		 NCBI
Show Blast
XP_002974021.1 hypothetical protein SELMODRAFT_52354 [Selaginella moellendorffii]
Evalue: 5e-62 | Bitscore: 243
Identities = 175/519 (34%), Positives = 266/519 (51%), Gaps = 75/519 (14%)		 NCBI
Show Blast
XP_002983470.1 hypothetical protein SELMODRAFT_422791 [Selaginella moellendorffii]
Evalue: 4e-61 | Bitscore: 240
Identities = 171/519 (33%), Positives = 265/519 (51%), Gaps = 70/519 (13%)		 NCBI
Show Blast
ABK25011.1 unknown [Picea sitchensis]
Evalue: 4e-60 | Bitscore: 237
Identities = 179/521 (34%), Positives = 268/521 (51%), Gaps = 76/521 (15%)		 NCBI
Show Blast
XP_002866387.1 hypothetical protein ARALYDRAFT_496212 [Arabidopsis lyrata subsp. lyrata]
Evalue: 6e-60 | Bitscore: 236
Identities = 173/527 (33%), Positives = 258/527 (49%), Gaps = 89/527 (17%)		 NCBI
Show Blast
ACM50883.1 protein disulfide isomerase 1 [Ulva fasciata]
Evalue: 1e-58 | Bitscore: 232
Identities = 165/521 (32%), Positives = 257/521 (49%), Gaps = 67/521 (13%)		 NCBI
Show Blast
NP_851234.1 ATPDIL1-4 (PDI-LIKE 1-4); protein disulfide isomerase [Arabidopsis thaliana]
Evalue: 2e-58 | Bitscore: 232
Identities = 177/529 (33%), Positives = 257/529 (49%), Gaps = 93/529 (18%)		 NCBI
Show Blast
AAM65262.1 protein disulfide isomerase precursor-like [Arabidopsis thaliana]
Evalue: 2e-58 | Bitscore: 231
Identities = 177/529 (33%), Positives = 256/529 (48%), Gaps = 93/529 (18%)		 NCBI
Show Blast
XP_001752316.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 4e-57 | Bitscore: 227
Identities = 172/524 (33%), Positives = 258/524 (49%), Gaps = 87/524 (17%)		 NCBI
Show Blast
XP_001759797.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-55 | Bitscore: 222
Identities = 168/521 (32%), Positives = 251/521 (48%), Gaps = 76/521 (15%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy07g03480
Redo Blast
CDS Length
1791 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy07g03480
Redo Blast
Protein Length
597 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_5.clus599.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_5.clus599.Contig2 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_5.clus278.Contig2 Support ModelY More Info