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Bathycoccus prasinos


Gene ID
Bathy07g02120
Locus
Bathy07g02120
Functional Description
unnamed protein product
Gene Type
protein-coding gene
Contig
bathy_chrom_07
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
unnamed protein product
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
IPR012336 Thioredoxin-like fold InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003078345.1 unnamed protein product [Ostreococcus tauri]
Evalue: 5e-22 | Bitscore: 108
Identities = 97/266 (36%), Positives = 117/266 (44%), Gaps = 67/266 (25%)		 NCBI
Show Blast
XP_001417036.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-19 | Bitscore: 101
Identities = 86/252 (34%), Positives = 109/252 (43%), Gaps = 77/252 (31%)		 NCBI
Show Blast
BAH29954.1 chloroplastic NADPH-dependent thioredoxin reductase [Chlorella vulgaris]
Evalue: 0.069 | Bitscore: 42
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (3%)		 NCBI
Show Blast
NP_680933.1 hypothetical protein tll0142 [Thermosynechococcus elongatus BP-1]
Evalue: 0.077 | Bitscore: 42
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 11/83 (13%)		 NCBI
Show Blast
XP_381346.1 hypothetical protein FG01170.1 [Gibberella zeae PH-1]
Evalue: 0.25 | Bitscore: 40
Identities = 31/116 (27%), Positives = 49/116 (42%), Gaps = 18/116 (16%)		 NCBI
Show Blast
3KP8 Chain A, The Thioredoxin-Like Domain Of A Vkor Homolog From Synechococcus Sp.
Evalue: 0.4 | Bitscore: 39
Identities = 30/101 (30%), Positives = 49/101 (49%), Gaps = 16/101 (16%)		 NCBI
Show Blast
3KP9 Chain A, Structure Of A Bacterial Homolog Of Vitamin K Epoxide Reductase
Evalue: 0.55 | Bitscore: 39
Identities = 30/101 (30%), Positives = 49/101 (49%), Gaps = 16/101 (16%)		 NCBI
Show Blast
YP_478481.1 VKORC1/thioredoxin domain-containing protein [Synechococcus sp. JA-2-3B'a(2-13)]
Evalue: 0.56 | Bitscore: 39
Identities = 30/101 (30%), Positives = 49/101 (49%), Gaps = 16/101 (16%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy07g02120
Redo Blast
CDS Length
762 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy07g02120
Redo Blast
Protein Length
254 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a