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Bathycoccus prasinos


Gene ID
Bathy07g01100
Locus
Bathy07g01100
Functional Description
unknown protein
Gene Type
protein-coding gene
Contig
bathy_chrom_07
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
unknown protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
nucleus

Molecular Function
1.
DNA binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR004333 Transcription factor, SBP-box InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002892031.1 hypothetical protein ARALYDRAFT_470069 [Arabidopsis lyrata subsp. lyrata]
Evalue: 0.059 | Bitscore: 45
Identities = 30/91 (33%), Positives = 42/91 (46%), Gaps = 1/91 (1%)		 NCBI
Show Blast
NP_683267.1 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8); DNA binding [Arabidopsis thaliana]
Evalue: 0.093 | Bitscore: 44
Identities = 30/91 (33%), Positives = 42/91 (46%), Gaps = 1/91 (1%)		 NCBI
Show Blast
BAC42797.1 putative squamosa promoter binding protein 8 SPL8 [Arabidopsis thaliana]
Evalue: 0.096 | Bitscore: 44
Identities = 30/91 (33%), Positives = 42/91 (46%), Gaps = 1/91 (1%)		 NCBI
Show Blast
BAJ92578.1 predicted protein [Hordeum vulgare subsp. vulgare]
Evalue: 0.37 | Bitscore: 42
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 0/52 (0%)		 NCBI
Show Blast
CAB56584.1 squamosa promoter binding protein-like 4 [Arabidopsis thaliana]
Evalue: 0.38 | Bitscore: 42
Identities = 37/111 (33%), Positives = 55/111 (50%), Gaps = 9/111 (8%)		 NCBI
Show Blast
CAB56568.1 squamosa promoter binding protein-homologue 3 [Antirrhinum majus]
Evalue: 0.4 | Bitscore: 42
Identities = 35/124 (28%), Positives = 53/124 (43%), Gaps = 3/124 (2%)		 NCBI
Show Blast
NP_175723.1 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor [Arabidopsis thaliana]
Evalue: 0.47 | Bitscore: 42
Identities = 37/111 (33%), Positives = 55/111 (50%), Gaps = 9/111 (8%)		 NCBI
Show Blast
EEC70457.1 hypothetical protein OsI_01492 [Oryza sativa Indica Group]
Evalue: 0.75 | Bitscore: 41
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 3/97 (3%)		 NCBI
Show Blast
XP_002460490.1 hypothetical protein SORBIDRAFT_02g029300 [Sorghum bicolor]
Evalue: 0.85 | Bitscore: 41
Identities = 32/94 (34%), Positives = 42/94 (45%), Gaps = 8/94 (9%)		 NCBI
Show Blast
CAJ41454.1 liguleless-like protein [Hordeum vulgare]
Evalue: 0.87 | Bitscore: 41
Identities = 28/76 (37%), Positives = 38/76 (50%), Gaps = 2/76 (3%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy07g01100
Redo Blast
CDS Length
3321 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy07g01100
Redo Blast
Protein Length
1107 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_5.clus659.Contig1 Support ModelY More Info
EST IDSuperContig_5.clus16.Contig1 Support ModelY More Info
EST IDSuperContig_5.clus161.Contig1 Support ModelY More Info