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Bathycoccus prasinos


Gene ID
Bathy07g00670
Locus
Bathy07g00670
Functional Description
plasminogen
Gene Type
protein-coding gene
Contig
bathy_chrom_07
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
plasminogen
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
PTHR24259 FAMILY NOT NAMED HMMPanther
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR000001 Kringle InterPro
IPR018249 EF-HAND 2 InterPro
IPR013806 Kringle-like fold InterPro
IPR013320 Concanavalin A-like lectin/glucanase, subgroup InterPro
PR01217 PRICHEXTENSN FPrintScan

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003082128.1 LPA (ISS) [Ostreococcus tauri]
Evalue: 6e-97 | Bitscore: 362
Identities = 291/1016 (29%), Positives = 451/1016 (44%), Gaps = 119/1016 (12%)
NCBI
Show Blast
XP_003078753.1 unnamed protein product [Ostreococcus tauri]
Evalue: 4e-77 | Bitscore: 296
Identities = 261/945 (28%), Positives = 395/945 (42%), Gaps = 200/945 (21%)
NCBI
Show Blast
XP_001422029.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 8e-56 | Bitscore: 226
Identities = 240/912 (26%), Positives = 380/912 (42%), Gaps = 164/912 (18%)
NCBI
Show Blast
XP_003077935.1 Plg protein (ISS) [Ostreococcus tauri]
Evalue: 3e-54 | Bitscore: 220
Identities = 233/862 (27%), Positives = 381/862 (44%), Gaps = 142/862 (16%)
NCBI
Show Blast
XP_001417304.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-46 | Bitscore: 195
Identities = 196/729 (27%), Positives = 316/729 (43%), Gaps = 123/729 (17%)
NCBI
Show Blast
XP_003078752.1 unnamed protein product [Ostreococcus tauri]
Evalue: 7e-20 | Bitscore: 106
Identities = 97/373 (26%), Positives = 161/373 (43%), Gaps = 32/373 (9%)
NCBI
Show Blast
Q5R8X6 Plasminogen OS=Pongo abelii GN=PLG PE=2 SV=1
Evalue: 1e-18 | Bitscore: 98
Identities = 42/73 (57%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
SwissP
Show Blast
XP_001417848.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-17 | Bitscore: 97
Identities = 43/72 (60%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
NCBI
Show Blast
P81286 Plasminogen (Fragment) OS=Ovis aries GN=PLG PE=1 SV=1
Evalue: 5e-18 | Bitscore: 96
Identities = 40/72 (55%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
SwissP
Show Blast
XP_002605480.1 hypothetical protein BRAFLDRAFT_92897 [Branchiostoma floridae]
Evalue: 7e-17 | Bitscore: 96
Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 3/80 (4%)
NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy07g00670
Redo Blast
CDS Length
12012 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy07g00670
Redo Blast
Protein Length
4004 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_5.clus217.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information