- Gene ID
- Bathy06g04960
- Locus
- Bathy06g04960
- Functional Description
- thioredoxin
- Gene Type
- protein-coding gene
- Contig
- bathy_chrom_06
- Last Modified On
- 12 July 2011 21h39
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
| Sorry, only history comparison allowed for non logged in users!! |
Compare this version with :
Go! |
Link Out
pico-PLAZA - lookup this gene in the PLAZA resource |
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- thioredoxin
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
n/a
- Molecular Function
-
n/a
- Biological Process
-
1.
cell redox homeostasis
Protein Domains
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| XP_003078806.1 |
OSJNBb0011E04.120 gene product (ISS) [Ostreococcus tauri]
Evalue: 8e-45 | Bitscore: 183
Identities = 84/103 (82%), Positives = 98/103 (95%), Gaps = 0/103 (0%) |
NCBI |
Show Blast
|
| XP_001417518.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-42 | Bitscore: 176
Identities = 79/103 (77%), Positives = 97/103 (94%), Gaps = 0/103 (0%) |
NCBI |
Show Blast
|
| XP_003057662.1 |
thioredoxin-related protein [Micromonas pusilla CCMP1545]
Evalue: 8e-36 | Bitscore: 153
Identities = 68/103 (66%), Positives = 88/103 (85%), Gaps = 0/103 (0%) |
NCBI |
Show Blast
|
| XP_002501870.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 1e-35 | Bitscore: 152
Identities = 70/99 (71%), Positives = 84/99 (85%), Gaps = 0/99 (0%) |
NCBI |
Show Blast
|
| ABR23155.1 |
thioredoxin [Ulva fasciata]
Evalue: 5e-28 | Bitscore: 127
Identities = 54/103 (52%), Positives = 82/103 (80%), Gaps = 0/103 (0%) |
NCBI |
Show Blast
|
| XP_001694975.1 |
thioredoxin-related protein CITRX [Chlamydomonas reinhardtii]
Evalue: 4e-26 | Bitscore: 120
Identities = 52/99 (53%), Positives = 75/99 (76%), Gaps = 0/99 (0%) |
NCBI |
Show Blast
|
| XP_001769542.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-24 | Bitscore: 115
Identities = 51/104 (49%), Positives = 78/104 (75%), Gaps = 1/104 (1%) |
NCBI |
Show Blast
|
| ABK92821.1 |
unknown [Populus trichocarpa]
Evalue: 2e-23 | Bitscore: 112
Identities = 52/104 (50%), Positives = 74/104 (71%), Gaps = 1/104 (1%) |
NCBI |
Show Blast
|
| XP_002299198.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-23 | Bitscore: 111
Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 1/104 (1%) |
NCBI |
Show Blast
|
| NP_187329.1 |
thioredoxin family protein [Arabidopsis thaliana] sp|Q9M7X9.1|CITRX_ARATH RecName: Full=Thioredoxin-like protein CITRX, chloroplastic;
Evalue: 4e-22 | Bitscore: 107
Identities = 47/104 (45%), Positives = 72/104 (69%), Gaps = 1/104 (1%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| XP_003078806.1 |
OSJNBb0011E04.120 gene product (ISS) [Ostreococcus tauri]
Evalue: 8e-45 | Bitscore: 183
Identities = 84/103 (82%), Positives = 98/103 (95%), Gaps = 0/103 (0%) |
NCBI |
Show Blast
|
| XP_001417518.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-42 | Bitscore: 176
Identities = 79/103 (77%), Positives = 97/103 (94%), Gaps = 0/103 (0%) |
NCBI |
Show Blast
|
| XP_003057662.1 |
thioredoxin-related protein [Micromonas pusilla CCMP1545]
Evalue: 8e-36 | Bitscore: 153
Identities = 68/103 (66%), Positives = 88/103 (85%), Gaps = 0/103 (0%) |
NCBI |
Show Blast
|
| XP_002501870.1 |
predicted protein [Micromonas sp. RCC299]
Evalue: 1e-35 | Bitscore: 152
Identities = 70/99 (71%), Positives = 84/99 (85%), Gaps = 0/99 (0%) |
NCBI |
Show Blast
|
| ABR23155.1 |
thioredoxin [Ulva fasciata]
Evalue: 5e-28 | Bitscore: 127
Identities = 54/103 (52%), Positives = 82/103 (80%), Gaps = 0/103 (0%) |
NCBI |
Show Blast
|
| XP_001694975.1 |
thioredoxin-related protein CITRX [Chlamydomonas reinhardtii]
Evalue: 4e-26 | Bitscore: 120
Identities = 52/99 (53%), Positives = 75/99 (76%), Gaps = 0/99 (0%) |
NCBI |
Show Blast
|
| XP_001769542.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-24 | Bitscore: 115
Identities = 51/104 (49%), Positives = 78/104 (75%), Gaps = 1/104 (1%) |
NCBI |
Show Blast
|
| ABK92821.1 |
unknown [Populus trichocarpa]
Evalue: 2e-23 | Bitscore: 112
Identities = 52/104 (50%), Positives = 74/104 (71%), Gaps = 1/104 (1%) |
NCBI |
Show Blast
|
| XP_002299198.1 |
predicted protein [Populus trichocarpa]
Evalue: 3e-23 | Bitscore: 111
Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 1/104 (1%) |
NCBI |
Show Blast
|
| NP_187329.1 |
thioredoxin family protein [Arabidopsis thaliana] sp|Q9M7X9.1|CITRX_ARATH RecName: Full=Thioredoxin-like protein CITRX, chloroplastic;
Evalue: 4e-22 | Bitscore: 107
Identities = 47/104 (45%), Positives = 72/104 (69%), Gaps = 1/104 (1%) |
NCBI |
Show Blast
|
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q9M7X9 |
Thioredoxin-like protein CITRX, chloroplastic OS=Arabidopsis thaliana GN=At3g06730 PE=1 SV=1
Evalue: 1e-22 | Bitscore: 104
Identities = 47/104 (45%), Positives = 72/104 (69%), Gaps = 1/104 (0%) |
SwissP |
Show Blast
|
| Q8H2V6 |
Thioredoxin-like protein CITRX, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0378900 PE=2 SV=1
Evalue: 3e-22 | Bitscore: 103
Identities = 46/97 (47%), Positives = 67/97 (69%) |
SwissP |
Show Blast
|
| Q5JMR9 |
Thioredoxin Y, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0963400 PE=2 SV=2
Evalue: 9e-15 | Bitscore: 79
Identities = 37/89 (41%), Positives = 57/89 (64%), Gaps = 2/89 (2%) |
SwissP |
Show Blast
|
| Q8L7S9 |
Thioredoxin Y2, chloroplastic OS=Arabidopsis thaliana GN=At1g43560 PE=1 SV=1
Evalue: 1e-13 | Bitscore: 74
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%) |
SwissP |
Show Blast
|
| P52232 |
Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803) GN=slr0233 PE=3 SV=1
Evalue: 6e-13 | Bitscore: 72
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%) |
SwissP |
Show Blast
|
| O51088 |
Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 SV=1
Evalue: 6e-13 | Bitscore: 72
Identities = 27/64 (42%), Positives = 45/64 (70%) |
SwissP |
Show Blast
|
| Q6NPF9 |
Thioredoxin Y1, chloroplastic OS=Arabidopsis thaliana GN=At1g76760 PE=2 SV=1
Evalue: 7e-13 | Bitscore: 72
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 2/101 (1%) |
SwissP |
Show Blast
|
| P23400 |
Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3
Evalue: 2e-10 | Bitscore: 64
Identities = 27/103 (26%), Positives = 60/103 (58%), Gaps = 2/103 (1%) |
SwissP |
Show Blast
|
| Q7M1B9 |
Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3
Evalue: 3e-10 | Bitscore: 63
Identities = 26/59 (44%), Positives = 43/59 (72%) |
SwissP |
Show Blast
|
| P48384 |
Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1
Evalue: 4e-10 | Bitscore: 63
Identities = 26/86 (30%), Positives = 52/86 (60%), Gaps = 2/86 (2%) |
SwissP |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Alternative Models
- n/a
-
Protein
Associated ESTs/cDNAs
- n/a
-
|
