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Bathycoccus prasinos


Gene ID
Bathy06g03720
Locus
Bathy06g03720
Functional Description
thioredoxin
Gene Type
protein-coding gene
Contig
bathy_chrom_06
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
thioredoxin
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
n/a
Biological Process
1.
cell redox homeostasis

Protein Domains 


Domain IDDescriptionDatabase
SSF48452 TPR-like superfamily
IPR005746 Thioredoxin InterPro
IPR011990 Tetratricopeptide-like helical InterPro
IPR012335 Thioredoxin fold InterPro
IPR017936 Thioredoxin-like InterPro
IPR013766 Thioredoxin domain InterPro
IPR017937 Thioredoxin, conserved site InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002506100.1 predicted protein [Micromonas sp. RCC299]
Evalue: 3e-39 | Bitscore: 167
Identities = 141/405 (35%), Positives = 202/405 (50%), Gaps = 39/405 (10%)		 NCBI
Show Blast
XP_003062458.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-34 | Bitscore: 151
Identities = 140/404 (35%), Positives = 193/404 (48%), Gaps = 34/404 (8%)		 NCBI
Show Blast
XP_003083927.1 MGC80314 protein (ISS) [Ostreococcus tauri]
Evalue: 3e-29 | Bitscore: 134
Identities = 96/254 (38%), Positives = 133/254 (52%), Gaps = 34/254 (13%)		 NCBI
Show Blast
AAB01771.1 thioredoxin homolog [Naegleria fowleri]
Evalue: 9e-21 | Bitscore: 105
Identities = 47/98 (48%), Positives = 72/98 (73%), Gaps = 1/98 (1%)		 NCBI
Show Blast
XP_001892562.1 Thioredoxin family protein [Brugia malayi]
Evalue: 1e-19 | Bitscore: 102
Identities = 42/84 (50%), Positives = 66/84 (79%), Gaps = 1/84 (1%)		 NCBI
Show Blast
XP_001422018.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-19 | Bitscore: 100
Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 1/100 (1%)		 NCBI
Show Blast
CBZ49590.1 thioredoxin h, related [Neospora caninum Liverpool]
Evalue: 1e-18 | Bitscore: 99
Identities = 45/94 (48%), Positives = 67/94 (71%), Gaps = 1/94 (1%)		 NCBI
Show Blast
EFP83184.1 hypothetical protein PGTG_09137 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Evalue: 2e-18 | Bitscore: 98
Identities = 44/100 (44%), Positives = 70/100 (70%), Gaps = 3/100 (3%)		 NCBI
Show Blast
XP_001957515.1 GF23991 [Drosophila ananassae]
Evalue: 2e-18 | Bitscore: 98
Identities = 46/87 (53%), Positives = 59/87 (68%), Gaps = 1/87 (1%)		 NCBI
Show Blast
XP_001633915.1 predicted protein [Nematostella vectensis]
Evalue: 3e-18 | Bitscore: 97
Identities = 40/85 (47%), Positives = 61/85 (72%), Gaps = 1/85 (1%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy06g03720
Redo Blast
CDS Length
1242 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy06g03720
Redo Blast
Protein Length
414 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a