Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy06g02400
Locus
Bathy06g02400
Functional Description
conserved unknown protein
Gene Type
protein-coding gene
Contig
bathy_chrom_06
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
conserved unknown protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
PTHR23050 FAMILY NOT NAMED HMMPanther
IPR011992 EF-hand-like domain InterPro
IPR010308 Protein of unknown function DUF907, fungi InterPro
G3DSA:2.60.40.1260 no description Gene3D

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CBJ48563.1 polymorphic outer membrane protein [Ectocarpus siliculosus]
Evalue: 1e-23 | Bitscore: 117
Identities = 103/455 (23%), Positives = 187/455 (41%), Gaps = 73/455 (16%)		 NCBI
Show Blast
CBN79340.1 polymorphic outer membrane protein G/I family protein [Ectocarpus siliculosus]
Evalue: 2e-23 | Bitscore: 117
Identities = 109/488 (22%), Positives = 196/488 (40%), Gaps = 95/488 (19%)		 NCBI
Show Blast
CBJ28277.1 conserved unknown protein [Ectocarpus siliculosus]
Evalue: 1e-22 | Bitscore: 114
Identities = 79/313 (25%), Positives = 149/313 (48%), Gaps = 22/313 (7%)		 NCBI
Show Blast
EGB05994.1 hypothetical protein AURANDRAFT_72082 [Aureococcus anophagefferens]
Evalue: 9e-22 | Bitscore: 111
Identities = 97/351 (28%), Positives = 154/351 (44%), Gaps = 44/351 (13%)		 NCBI
Show Blast
CBN78341.1 probable extracellular nuclease [Ectocarpus siliculosus]
Evalue: 1e-21 | Bitscore: 110
Identities = 77/342 (23%), Positives = 145/342 (42%), Gaps = 43/342 (13%)		 NCBI
Show Blast
CBJ28533.1 conserved unknown protein [Ectocarpus siliculosus]
Evalue: 1e-21 | Bitscore: 110
Identities = 111/511 (22%), Positives = 203/511 (40%), Gaps = 91/511 (18%)		 NCBI
Show Blast
CBJ48855.1 conserved unknown protein [Ectocarpus siliculosus]
Evalue: 2e-21 | Bitscore: 110
Identities = 73/300 (24%), Positives = 147/300 (49%), Gaps = 20/300 (7%)		 NCBI
Show Blast
CBJ48858.1 polymorphic Outer membrane protein G/I family [Ectocarpus siliculosus]
Evalue: 2e-21 | Bitscore: 110
Identities = 89/380 (23%), Positives = 166/380 (44%), Gaps = 46/380 (12%)		 NCBI
Show Blast
CBN75177.1 polymorphic Outer membrane protein G/I family [Ectocarpus siliculosus]
Evalue: 3e-20 | Bitscore: 106
Identities = 76/301 (25%), Positives = 147/301 (49%), Gaps = 21/301 (7%)		 NCBI
Show Blast
CBN75178.1 polymorphic Outer membrane protein G/I family [Ectocarpus siliculosus]
Evalue: 4e-20 | Bitscore: 105
Identities = 74/303 (24%), Positives = 142/303 (47%), Gaps = 26/303 (9%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy06g02400
Redo Blast
CDS Length
4170 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy06g02400
Redo Blast
Protein Length
1390 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a