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Bathycoccus prasinos


Gene ID
Bathy06g02310
Locus
Bathy06g02310
Functional Description
thioredoxin
Gene Type
protein-coding gene
Contig
bathy_chrom_06
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
thioredoxin
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
n/a
Biological Process
1.
cell redox homeostasis

Protein Domains 


Domain IDDescriptionDatabase
IPR005746 Thioredoxin InterPro
IPR012335 Thioredoxin fold InterPro
IPR017936 Thioredoxin-like InterPro
IPR013766 Thioredoxin domain InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003077975.1 thioredoxin (ISS) [Ostreococcus tauri]
Evalue: 3e-21 | Bitscore: 105
Identities = 62/148 (42%), Positives = 93/148 (63%), Gaps = 4/148 (3%)		 NCBI
Show Blast
AAB01771.1 thioredoxin homolog [Naegleria fowleri]
Evalue: 2e-12 | Bitscore: 77
Identities = 37/81 (46%), Positives = 55/81 (68%), Gaps = 3/81 (4%)		 NCBI
Show Blast
XP_002506660.1 predicted protein [Micromonas sp. RCC299]
Evalue: 5e-12 | Bitscore: 75
Identities = 34/71 (48%), Positives = 51/71 (72%), Gaps = 2/71 (3%)		 NCBI
Show Blast
XP_001767958.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 5e-12 | Bitscore: 75
Identities = 35/71 (49%), Positives = 48/71 (68%), Gaps = 2/71 (3%)		 NCBI
Show Blast
Q9UW02 Thioredoxin OS=Coprinus comatus PE=1 SV=1
Evalue: 4e-13 | Bitscore: 74
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 3/85 (3%)		 SwissP
Show Blast
Q5R9M3 Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3
Evalue: 1e-12 | Bitscore: 73
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 1/65 (1%)		 SwissP
Show Blast
XP_002674160.1 predicted protein [Naegleria gruberi]
Evalue: 1e-11 | Bitscore: 73
Identities = 38/81 (47%), Positives = 51/81 (63%), Gaps = 3/81 (4%)		 NCBI
Show Blast
XP_002116215.1 hypothetical protein TRIADDRAFT_30625 [Trichoplax adhaerens]
Evalue: 2e-11 | Bitscore: 73
Identities = 33/77 (43%), Positives = 52/77 (68%), Gaps = 2/77 (3%)		 NCBI
Show Blast
2VM1 Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant
Evalue: 2e-11 | Bitscore: 73
Identities = 40/99 (40%), Positives = 63/99 (64%), Gaps = 2/99 (2%)		 NCBI
Show Blast
NP_001085522.1 MGC80314 protein [Xenopus laevis]
Evalue: 2e-11 | Bitscore: 73
Identities = 34/65 (52%), Positives = 46/65 (71%), Gaps = 2/65 (3%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy06g02310
Redo Blast
CDS Length
639 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy06g02310
Redo Blast
Protein Length
213 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a