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Bathycoccus prasinos


Gene ID
Bathy05g05110
Locus
Bathy05g05110
Functional Description
Potassium channel protein
Gene Type
protein-coding gene
Contig
bathy_chrom_05
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
Potassium channel protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
SSF81324 Voltage-gated potassium channels superfamily
PTHR11003 FAMILY NOT NAMED HMMPanther
IPR003280 Potassium channel, two pore-domain InterPro
IPR018247 EF-Hand 1, calcium-binding site InterPro
G3DSA:1.10.287.70 no description Gene3D
IPR013099 Ion transport 2 InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003083135.1 putative outward-rectifying potassium channel KCO1 (ISS) [Ostreococcus tauri]
Evalue: 2e-40 | Bitscore: 171
Identities = 103/304 (34%), Positives = 177/304 (58%), Gaps = 13/304 (4%)		 NCBI
Show Blast
XP_001418328.1 VIC family transporter: calcium-activated outward-rectifying potassium ion channel [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-39 | Bitscore: 169
Identities = 94/291 (32%), Positives = 153/291 (53%), Gaps = 31/291 (11%)		 NCBI
Show Blast
XP_003080085.1 putative potassium channel (ISS) [Ostreococcus tauri]
Evalue: 1e-37 | Bitscore: 162
Identities = 86/257 (33%), Positives = 141/257 (55%), Gaps = 11/257 (4%)		 NCBI
Show Blast
XP_002998320.1 Voltage-gated Ion Channel (VIC) Superfamily [Phytophthora infestans T30-4]
Evalue: 2e-21 | Bitscore: 108
Identities = 73/275 (27%), Positives = 134/275 (49%), Gaps = 10/275 (4%)		 NCBI
Show Blast
XP_001906180.1 hypothetical protein [Podospora anserina S mat+]
Evalue: 1e-14 | Bitscore: 85
Identities = 63/225 (28%), Positives = 111/225 (49%), Gaps = 16/225 (7%)		 NCBI
Show Blast
XP_002552876.1 KLTH0D03476p [Lachancea thermotolerans]
Evalue: 5e-14 | Bitscore: 83
Identities = 56/196 (29%), Positives = 98/196 (50%), Gaps = 21/196 (11%)		 NCBI
Show Blast
XP_002973167.1 hypothetical protein SELMODRAFT_450201 [Selaginella moellendorffii]
Evalue: 2e-13 | Bitscore: 82
Identities = 78/295 (26%), Positives = 124/295 (42%), Gaps = 50/295 (17%)		 NCBI
Show Blast
CAD53325.1 potassium channel [Neurospora crassa]
Evalue: 2e-13 | Bitscore: 81
Identities = 69/272 (25%), Positives = 131/272 (48%), Gaps = 24/272 (9%)		 NCBI
Show Blast
XP_001227162.1 hypothetical protein CHGG_09235 [Chaetomium globosum CBS 148.51]
Evalue: 2e-13 | Bitscore: 81
Identities = 70/283 (25%), Positives = 139/283 (49%), Gaps = 29/283 (10%)		 NCBI
Show Blast
XP_002177473.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 5e-13 | Bitscore: 80
Identities = 72/296 (24%), Positives = 133/296 (45%), Gaps = 30/296 (10%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy05g05110
Redo Blast
CDS Length
1326 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy05g05110
Redo Blast
Protein Length
442 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_16.clus324.Contig3 Support ModelN More Info
CommentEST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model
EST IDSuperContig_16.clus324.Contig1 Support ModelY More Info