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Bathycoccus prasinos


Gene ID
Bathy05g03480
Locus
Bathy05g03480
Functional Description
chaperonin HslO
Gene Type
protein-coding gene
Contig
bathy_chrom_05
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
chaperonin HslO
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
cytoplasm

Molecular Function
1.
unfolded protein binding

Biological Process
1.
protein folding

Protein Domains 


Domain IDDescriptionDatabase
IPR000397 Heat shock protein Hsp33 protein InterPro
IPR016154 Heat shock protein Hsp33 protein, C-terminal InterPro
IPR016153 Heat shock protein Hsp33 protein, N-terminal InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002499751.1 predicted protein [Micromonas sp. RCC299]
Evalue: 4e-112 | Bitscore: 408
Identities = 184/298 (62%), Positives = 239/298 (80%), Gaps = 0/298 (0%)		 NCBI
Show Blast
XP_003062159.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-99 | Bitscore: 365
Identities = 177/295 (60%), Positives = 224/295 (76%), Gaps = 0/295 (0%)		 NCBI
Show Blast
XP_003079964.1 unnamed protein product [Ostreococcus tauri]
Evalue: 2e-98 | Bitscore: 363
Identities = 172/291 (59%), Positives = 227/291 (78%), Gaps = 0/291 (0%)		 NCBI
Show Blast
XP_001418269.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-96 | Bitscore: 357
Identities = 168/284 (59%), Positives = 225/284 (79%), Gaps = 0/284 (0%)		 NCBI
Show Blast
XP_002952668.1 hypothetical protein VOLCADRAFT_62890 [Volvox carteri f. nagariensis]
Evalue: 9e-87 | Bitscore: 324
Identities = 155/295 (53%), Positives = 219/295 (74%), Gaps = 1/295 (0%)		 NCBI
Show Blast
XP_001700446.1 heat shock protein 33 [Chlamydomonas reinhardtii]
Evalue: 9e-84 | Bitscore: 314
Identities = 151/295 (51%), Positives = 215/295 (73%), Gaps = 1/295 (0%)		 NCBI
Show Blast
XP_002991558.1 hypothetical protein SELMODRAFT_186164 [Selaginella moellendorffii]
Evalue: 2e-71 | Bitscore: 273
Identities = 137/302 (45%), Positives = 200/302 (66%), Gaps = 8/302 (3%)		 NCBI
Show Blast
XP_001764614.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-71 | Bitscore: 273
Identities = 138/284 (49%), Positives = 194/284 (68%), Gaps = 10/284 (4%)		 NCBI
Show Blast
XP_002971735.1 hypothetical protein SELMODRAFT_412307 [Selaginella moellendorffii]
Evalue: 5e-71 | Bitscore: 272
Identities = 137/302 (45%), Positives = 199/302 (66%), Gaps = 8/302 (3%)		 NCBI
Show Blast
XP_001753155.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 8e-67 | Bitscore: 258
Identities = 149/334 (45%), Positives = 208/334 (62%), Gaps = 46/334 (14%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy05g03480
Redo Blast
CDS Length
915 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy05g03480
Redo Blast
Protein Length
305 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_16.clus137.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information