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Bathycoccus prasinos


Gene ID
Bathy04g04910
Locus
Bathy04g04910
Functional Description
phosphoadenosine phosphosulfate reductase
Gene Type
protein-coding gene
Contig
bathy_chrom_04
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
phosphoadenosine phosphosulfate reductase
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR012335 Thioredoxin fold InterPro
IPR011992 EF-hand-like domain InterPro
IPR013766 Thioredoxin domain InterPro
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold InterPro
IPR018249 EF-HAND 2 InterPro
IPR002500 Phosphoadenosine phosphosulphate reductase InterPro
IPR017936 Thioredoxin-like InterPro
IPR012336 Thioredoxin-like fold InterPro
PTHR23056 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001422646.1 APS reductase [Ostreococcus lucimarinus CCE9901]
Evalue: 9e-151 | Bitscore: 538
Identities = 266/389 (68%), Positives = 310/389 (80%), Gaps = 13/389 (3%)
NCBI
Show Blast
XP_002505765.1 predicted protein [Micromonas sp. RCC299]
Evalue: 1e-144 | Bitscore: 518
Identities = 248/365 (68%), Positives = 292/365 (80%), Gaps = 6/365 (2%)
NCBI
Show Blast
XP_003082836.1 APS reductase (ISS) [Ostreococcus tauri]
Evalue: 2e-138 | Bitscore: 498
Identities = 240/363 (66%), Positives = 282/363 (78%), Gaps = 4/363 (1%)
NCBI
Show Blast
CAA04611.1 APS reductase [Brassica juncea]
Evalue: 5e-126 | Bitscore: 456
Identities = 220/395 (56%), Positives = 276/395 (70%), Gaps = 21/395 (5%)
NCBI
Show Blast
BAH57002.1 AT4G21990 [Arabidopsis thaliana]
Evalue: 2e-125 | Bitscore: 454
Identities = 213/363 (59%), Positives = 264/363 (73%), Gaps = 9/363 (2%)
NCBI
Show Blast
AAU03359.1 adenylyl-sulfate reductase [Solanum lycopersicum]
Evalue: 2e-125 | Bitscore: 454
Identities = 214/369 (58%), Positives = 269/369 (73%), Gaps = 10/369 (3%)
NCBI
Show Blast
NP_193930.1 APR3 (APS REDUCTASE 3); adenylyl-sulfate reductase [Arabidopsis thaliana]
Evalue: 8e-125 | Bitscore: 452
Identities = 212/363 (58%), Positives = 264/363 (73%), Gaps = 9/363 (2%)
NCBI
Show Blast
AAM65133.1 PRH26 protein [Arabidopsis thaliana]
Evalue: 8e-125 | Bitscore: 452
Identities = 212/366 (58%), Positives = 265/366 (72%), Gaps = 9/366 (2%)
NCBI
Show Blast
XP_002867800.1 PRH26 protein [Arabidopsis lyrata subsp. lyrata]
Evalue: 2e-124 | Bitscore: 451
Identities = 212/362 (59%), Positives = 263/362 (73%), Gaps = 9/362 (2%)
NCBI
Show Blast
P92980 5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2
Evalue: 1e-125 | Bitscore: 449
Identities = 215/378 (56%), Positives = 269/378 (71%), Gaps = 11/378 (2%)
SwissP
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy04g04910
Redo Blast
CDS Length
2082 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy04g04910
Redo Blast
Protein Length
694 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_3.clus217.Contig1 Support ModelN More Info
CommentEST is inconsistent with the given gene model.
EST IDSuperContig_3.clus473.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information