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Bathycoccus prasinos


Gene ID
Bathy04g04060
Locus
Bathy04g04060
Functional Description
epsilon frustilin
Gene Type
protein-coding gene
Contig
bathy_chrom_04
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
epsilon frustilin
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
PS51257 PROKAR_LIPOPROTEIN Prosite
IPR011992 EF-hand-like domain InterPro
SSF47473 EF-hand superfamily
IPR013320 Concanavalin A-like lectin/glucanase, subgroup InterPro
PR01217 PRICHEXTENSN FPrintScan
IPR018249 EF-HAND 2 InterPro
PTHR22397 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001422029.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-138 | Bitscore: 499
Identities = 438/1521 (29%), Positives = 665/1521 (44%), Gaps = 207/1521 (14%)
NCBI
Show Blast
XP_003077935.1 Plg protein (ISS) [Ostreococcus tauri]
Evalue: 4e-101 | Bitscore: 376
Identities = 305/1077 (28%), Positives = 475/1077 (44%), Gaps = 168/1077 (16%)
NCBI
Show Blast
XP_003078753.1 unnamed protein product [Ostreococcus tauri]
Evalue: 7e-99 | Bitscore: 369
Identities = 292/1029 (28%), Positives = 438/1029 (43%), Gaps = 139/1029 (14%)
NCBI
Show Blast
XP_003082128.1 LPA (ISS) [Ostreococcus tauri]
Evalue: 1e-92 | Bitscore: 348
Identities = 294/1051 (28%), Positives = 449/1051 (43%), Gaps = 171/1051 (16%)
NCBI
Show Blast
XP_001417304.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-84 | Bitscore: 319
Identities = 282/947 (30%), Positives = 435/947 (46%), Gaps = 133/947 (14%)
NCBI
Show Blast
XP_002182602.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 1e-41 | Bitscore: 179
Identities = 145/409 (35%), Positives = 182/409 (44%), Gaps = 119/409 (29%)
NCBI
Show Blast
XP_002184300.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 6e-35 | Bitscore: 156
Identities = 92/245 (38%), Positives = 120/245 (49%), Gaps = 21/245 (9%)
NCBI
Show Blast
XP_002179415.1 frustulin 3 [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 3e-34 | Bitscore: 154
Identities = 108/307 (35%), Positives = 144/307 (47%), Gaps = 76/307 (25%)
NCBI
Show Blast
CAA67703.1 alpha 3 frustulin [Cylindrotheca fusiformis]
Evalue: 2e-31 | Bitscore: 145
Identities = 100/238 (42%), Positives = 122/238 (51%), Gaps = 47/238 (20%)
NCBI
Show Blast
CAA67702.1 alpha 2 frustulin [Cylindrotheca fusiformis]
Evalue: 2e-24 | Bitscore: 121
Identities = 79/185 (43%), Positives = 89/185 (48%), Gaps = 36/185 (19%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy04g04060
Redo Blast
CDS Length
12054 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy04g04060
Redo Blast
Protein Length
4018 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_3.clus50.Contig1 Support ModelY More Info
EST IDSuperContig_3.clus259.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_3.clus178.Contig1 Support ModelY More Info
EST IDSuperContig_3.clus25.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_3.clus121.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information