- Gene ID
- Bathy04g04060
- Locus
- Bathy04g04060
- Functional Description
- epsilon frustilin
- Gene Type
- protein-coding gene
- Contig
- bathy_chrom_04
- Last Modified On
- 12 July 2011 21h39
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
Sorry, only history comparison allowed for non logged in users!! |
Compare this version with : Go! |
Link Out
pico-PLAZA - lookup this gene in the PLAZA resource |
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- epsilon frustilin
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- n/a
-
Protein Domains
Domain ID | Description | Database |
IPR018247 |
EF-Hand 1, calcium-binding site |
InterPro |
PS51257 |
PROKAR_LIPOPROTEIN |
Prosite |
IPR011992 |
EF-hand-like domain |
InterPro |
SSF47473 |
EF-hand |
superfamily |
IPR013320 |
Concanavalin A-like lectin/glucanase, subgroup |
InterPro |
PR01217 |
PRICHEXTENSN |
FPrintScan |
IPR018249 |
EF-HAND 2 |
InterPro |
PTHR22397 |
FAMILY NOT NAMED |
HMMPanther |
Protein Homologs
ProteinID | Description / BlastScore | Database | Actions |
XP_001422029.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-138 | Bitscore: 499 Identities = 438/1521 (29%), Positives = 665/1521 (44%), Gaps = 207/1521 (14%) |
NCBI |
Show Blast
|
XP_003077935.1 |
Plg protein (ISS) [Ostreococcus tauri]
Evalue: 4e-101 | Bitscore: 376 Identities = 305/1077 (28%), Positives = 475/1077 (44%), Gaps = 168/1077 (16%) |
NCBI |
Show Blast
|
XP_003078753.1 |
unnamed protein product [Ostreococcus tauri]
Evalue: 7e-99 | Bitscore: 369 Identities = 292/1029 (28%), Positives = 438/1029 (43%), Gaps = 139/1029 (14%) |
NCBI |
Show Blast
|
XP_003082128.1 |
LPA (ISS) [Ostreococcus tauri]
Evalue: 1e-92 | Bitscore: 348 Identities = 294/1051 (28%), Positives = 449/1051 (43%), Gaps = 171/1051 (16%) |
NCBI |
Show Blast
|
XP_001417304.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-84 | Bitscore: 319 Identities = 282/947 (30%), Positives = 435/947 (46%), Gaps = 133/947 (14%) |
NCBI |
Show Blast
|
XP_002182602.1 |
predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 1e-41 | Bitscore: 179 Identities = 145/409 (35%), Positives = 182/409 (44%), Gaps = 119/409 (29%) |
NCBI |
Show Blast
|
XP_002184300.1 |
predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 6e-35 | Bitscore: 156 Identities = 92/245 (38%), Positives = 120/245 (49%), Gaps = 21/245 (9%) |
NCBI |
Show Blast
|
XP_002179415.1 |
frustulin 3 [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 3e-34 | Bitscore: 154 Identities = 108/307 (35%), Positives = 144/307 (47%), Gaps = 76/307 (25%) |
NCBI |
Show Blast
|
CAA67703.1 |
alpha 3 frustulin [Cylindrotheca fusiformis]
Evalue: 2e-31 | Bitscore: 145 Identities = 100/238 (42%), Positives = 122/238 (51%), Gaps = 47/238 (20%) |
NCBI |
Show Blast
|
CAA67702.1 |
alpha 2 frustulin [Cylindrotheca fusiformis]
Evalue: 2e-24 | Bitscore: 121 Identities = 79/185 (43%), Positives = 89/185 (48%), Gaps = 36/185 (19%) |
NCBI |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
XP_001422029.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 5e-138 | Bitscore: 499 Identities = 438/1521 (29%), Positives = 665/1521 (44%), Gaps = 207/1521 (14%) |
NCBI |
Show Blast
|
XP_003077935.1 |
Plg protein (ISS) [Ostreococcus tauri]
Evalue: 4e-101 | Bitscore: 376 Identities = 305/1077 (28%), Positives = 475/1077 (44%), Gaps = 168/1077 (16%) |
NCBI |
Show Blast
|
XP_003078753.1 |
unnamed protein product [Ostreococcus tauri]
Evalue: 7e-99 | Bitscore: 369 Identities = 292/1029 (28%), Positives = 438/1029 (43%), Gaps = 139/1029 (14%) |
NCBI |
Show Blast
|
XP_003082128.1 |
LPA (ISS) [Ostreococcus tauri]
Evalue: 1e-92 | Bitscore: 348 Identities = 294/1051 (28%), Positives = 449/1051 (43%), Gaps = 171/1051 (16%) |
NCBI |
Show Blast
|
XP_001417304.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-84 | Bitscore: 319 Identities = 282/947 (30%), Positives = 435/947 (46%), Gaps = 133/947 (14%) |
NCBI |
Show Blast
|
XP_002182602.1 |
predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 1e-41 | Bitscore: 179 Identities = 145/409 (35%), Positives = 182/409 (44%), Gaps = 119/409 (29%) |
NCBI |
Show Blast
|
XP_002184300.1 |
predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 6e-35 | Bitscore: 156 Identities = 92/245 (38%), Positives = 120/245 (49%), Gaps = 21/245 (9%) |
NCBI |
Show Blast
|
XP_002179415.1 |
frustulin 3 [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 3e-34 | Bitscore: 154 Identities = 108/307 (35%), Positives = 144/307 (47%), Gaps = 76/307 (25%) |
NCBI |
Show Blast
|
CAA67703.1 |
alpha 3 frustulin [Cylindrotheca fusiformis]
Evalue: 2e-31 | Bitscore: 145 Identities = 100/238 (42%), Positives = 122/238 (51%), Gaps = 47/238 (20%) |
NCBI |
Show Blast
|
CAA67702.1 |
alpha 2 frustulin [Cylindrotheca fusiformis]
Evalue: 2e-24 | Bitscore: 121 Identities = 79/185 (43%), Positives = 89/185 (48%), Gaps = 36/185 (19%) |
NCBI |
Show Blast
|
No hits found against database Self with an e-value better than 1e-3. |
No hits found against database SwissP with an e-value better than 1e-3. |
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Alternative Models
- n/a
-
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
EST ID | SuperContig_3.clus50.Contig1 |
Support Model | Y |
More Info |
Mapping Location | 791536..793040 |
Strand - |
EST ID | SuperContig_3.clus259.Contig1 |
Support Model | Y |
More Info |
Comment | EST is non-spliced and has no reliable strand information |
Mapping Location | 793195..793703 |
Strand + |
EST ID | SuperContig_3.clus178.Contig1 |
Support Model | Y |
More Info |
Mapping Location | 793942..794249 |
Strand - |
EST ID | SuperContig_3.clus25.Contig1 |
Support Model | Y |
More Info |
Comment | EST is non-spliced and has no reliable strand information |
Mapping Location | 795120..795390 |
Strand + |
EST ID | SuperContig_3.clus121.Contig1 |
Support Model | Y |
More Info |
Comment | EST is non-spliced and has no reliable strand information |
Mapping Location | 795404..795906 |
Strand + |
|