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Bathycoccus prasinos


Gene ID
Bathy04g01040
Locus
Bathy04g01040
Functional Description
peroxiredoxin 6
Gene Type
protein-coding gene
Contig
bathy_chrom_04
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
peroxiredoxin 6
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
n/a
Biological Process
1.
cell redox homeostasis

Protein Domains 


Domain IDDescriptionDatabase
IPR019479 Peroxiredoxin, C-terminal InterPro
IPR012335 Thioredoxin fold InterPro
IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant InterPro
PTHR10681 THIOREDOXIN PEROXIDASE HMMPanther
IPR017936 Thioredoxin-like InterPro
G3DSA:3.30.1020.10 no description Gene3D

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002984521.1 hypothetical protein SELMODRAFT_181036 [Selaginella moellendorffii]
Evalue: 3e-67 | Bitscore: 259
Identities = 125/224 (56%), Positives = 167/224 (75%), Gaps = 6/224 (3%)		 NCBI
Show Blast
CAC38779.1 glutathione peroxidase [Suberites domuncula]
Evalue: 5e-67 | Bitscore: 258
Identities = 130/223 (58%), Positives = 164/223 (74%), Gaps = 7/223 (3%)		 NCBI
Show Blast
ABK26321.1 unknown [Picea sitchensis]
Evalue: 7e-67 | Bitscore: 258
Identities = 125/225 (56%), Positives = 162/225 (72%), Gaps = 5/225 (2%)		 NCBI
Show Blast
XP_002973052.1 hypothetical protein SELMODRAFT_148807 [Selaginella moellendorffii]
Evalue: 9e-67 | Bitscore: 258
Identities = 124/224 (55%), Positives = 167/224 (75%), Gaps = 6/224 (3%)		 NCBI
Show Blast
XP_001758490.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 9e-66 | Bitscore: 254
Identities = 128/224 (57%), Positives = 158/224 (71%), Gaps = 6/224 (3%)		 NCBI
Show Blast
ACF35639.1 peroxiredoxin 6 [Eriocheir sinensis]
Evalue: 4e-65 | Bitscore: 252
Identities = 122/221 (55%), Positives = 160/221 (72%), Gaps = 4/221 (2%)		 NCBI
Show Blast
XP_001759980.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-64 | Bitscore: 249
Identities = 124/224 (55%), Positives = 156/224 (70%), Gaps = 6/224 (3%)		 NCBI
Show Blast
ACJ53746.1 peroxiredoxin 6 [Scylla paramamosain]
Evalue: 4e-64 | Bitscore: 249
Identities = 121/221 (55%), Positives = 157/221 (71%), Gaps = 4/221 (2%)		 NCBI
Show Blast
XP_970660.2 PREDICTED: similar to 1-Cys peroxiredoxin [Tribolium castaneum]
Evalue: 9e-64 | Bitscore: 248
Identities = 115/221 (52%), Positives = 157/221 (71%), Gaps = 3/221 (1%)		 NCBI
Show Blast
XP_001968487.1 GG24478 [Drosophila erecta]
Evalue: 2e-63 | Bitscore: 246
Identities = 119/222 (54%), Positives = 163/222 (73%), Gaps = 6/222 (3%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy04g01040
Redo Blast
CDS Length
873 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy04g01040
Redo Blast
Protein Length
291 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_3.clus649.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information