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Bathycoccus prasinos


Gene ID
Bathy03g05430
Locus
Bathy03g05430
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_03
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
PTHR10984 ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN HMMPanther
IPR012335 Thioredoxin fold InterPro
IPR017936 Thioredoxin-like InterPro
IPR013766 Thioredoxin domain InterPro
IPR012936 Domain of unknown function DUF1692 InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001418112.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-85 | Bitscore: 322
Identities = 206/597 (35%), Positives = 302/597 (51%), Gaps = 97/597 (16%)
NCBI
Show Blast
XP_003056869.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 3e-82 | Bitscore: 310
Identities = 209/651 (32%), Positives = 318/651 (49%), Gaps = 115/651 (18%)
NCBI
Show Blast
XP_003079589.1 acyl-CoA thioester hydrolase-like (ISS) [Ostreococcus tauri]
Evalue: 3e-77 | Bitscore: 294
Identities = 207/649 (32%), Positives = 311/649 (48%), Gaps = 107/649 (16%)
NCBI
Show Blast
XP_002501003.1 predicted protein [Micromonas sp. RCC299]
Evalue: 1e-43 | Bitscore: 182
Identities = 112/307 (36%), Positives = 156/307 (51%), Gaps = 56/307 (18%)
NCBI
Show Blast
XP_003058982.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 5e-36 | Bitscore: 157
Identities = 152/615 (25%), Positives = 249/615 (40%), Gaps = 150/615 (24%)
NCBI
Show Blast
NP_567765.2 thioredoxin family protein [Arabidopsis thaliana] sp|Q9T042.1|PDI54_ARATH RecName: Full=Protein disulfide-isomerase 5-4; Short=AtPDIL5-4;
Evalue: 5e-33 | Bitscore: 147
Identities = 151/621 (24%), Positives = 247/621 (40%), Gaps = 170/621 (27%)
NCBI
Show Blast
NP_680742.2 thioredoxin family protein [Arabidopsis thaliana]
Evalue: 7e-32 | Bitscore: 143
Identities = 147/600 (25%), Positives = 237/600 (40%), Gaps = 167/600 (28%)
NCBI
Show Blast
XP_002281649.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-31 | Bitscore: 143
Identities = 148/626 (24%), Positives = 256/626 (41%), Gaps = 166/626 (27%)
NCBI
Show Blast
Q9T042 Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana GN=PDIL5-4 PE=2 SV=1
Evalue: 6e-33 | Bitscore: 142
Identities = 149/621 (23%), Positives = 243/621 (39%), Gaps = 170/621 (27%)
SwissP
Show Blast
XP_002522864.1 thioredoxin domain-containing protein, putative [Ricinus communis]
Evalue: 4e-31 | Bitscore: 141
Identities = 149/618 (24%), Positives = 250/618 (40%), Gaps = 164/618 (27%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy03g05430
Redo Blast
CDS Length
2025 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy03g05430
Redo Blast
Protein Length
675 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a