- Gene ID
- Bathy03g05120
- Locus
- Bathy03g05120
- Functional Description
- putative trehalase 1(B)
- Gene Type
- protein-coding gene
- Contig
- bathy_chrom_03
- Last Modified On
- 12 July 2011 21h39
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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pico-PLAZA - lookup this gene in the PLAZA resource |
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- putative trehalase 1(B)
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- n/a
-
Protein Domains
Domain ID | Description | Database |
IPR012335 |
Thioredoxin fold |
InterPro |
IPR004046 |
Glutathione S-transferase, C-terminal |
InterPro |
IPR017933 |
Glutathione S-transferase/chloride channel, C-terminal |
InterPro |
IPR004045 |
Glutathione S-transferase, N-terminal |
InterPro |
IPR018232 |
Glycoside hydrolase, family 37, conserved site |
InterPro |
IPR001661 |
Glycoside hydrolase, family 37 |
InterPro |
IPR010987 |
Glutathione S-transferase, C-terminal-like |
InterPro |
IPR012336 |
Thioredoxin-like fold |
InterPro |
Protein Homologs
ProteinID | Description / BlastScore | Database | Actions |
XP_003079541.1 |
putative trehalase (ISS) [Ostreococcus tauri]
Evalue: 5e-114 | Bitscore: 417 Identities = 208/462 (45%), Positives = 296/462 (64%), Gaps = 28/462 (6%) |
NCBI |
Show Blast
|
XP_001418096.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-114 | Bitscore: 417 Identities = 218/467 (47%), Positives = 293/467 (63%), Gaps = 38/467 (8%) |
NCBI |
Show Blast
|
XP_002502224.1 |
glycoside hydrolase family 37 protein [Micromonas sp. RCC299]
Evalue: 5e-95 | Bitscore: 354 Identities = 214/486 (44%), Positives = 279/486 (57%), Gaps = 68/486 (14%) |
NCBI |
Show Blast
|
ABO61746.1 |
trehalase [Physcomitrella patens subsp. patens]
Evalue: 2e-93 | Bitscore: 349 Identities = 193/458 (42%), Positives = 261/458 (57%), Gaps = 43/458 (9%) |
NCBI |
Show Blast
|
XP_002957229.1 |
hypothetical protein VOLCADRAFT_77459 [Volvox carteri f. nagariensis]
Evalue: 2e-92 | Bitscore: 346 Identities = 189/461 (41%), Positives = 257/461 (56%), Gaps = 35/461 (8%) |
NCBI |
Show Blast
|
XP_001775598.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-91 | Bitscore: 343 Identities = 184/456 (40%), Positives = 260/456 (57%), Gaps = 51/456 (11%) |
NCBI |
Show Blast
|
XP_001769611.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-91 | Bitscore: 343 Identities = 191/458 (42%), Positives = 256/458 (56%), Gaps = 51/458 (11%) |
NCBI |
Show Blast
|
XP_002303675.1 |
predicted protein [Populus trichocarpa]
Evalue: 4e-91 | Bitscore: 341 Identities = 189/458 (41%), Positives = 263/458 (57%), Gaps = 50/458 (11%) |
NCBI |
Show Blast
|
XP_002303674.1 |
predicted protein [Populus trichocarpa]
Evalue: 6e-88 | Bitscore: 331 Identities = 184/456 (40%), Positives = 257/456 (56%), Gaps = 46/456 (10%) |
NCBI |
Show Blast
|
ABR17991.1 |
unknown [Picea sitchensis]
Evalue: 1e-87 | Bitscore: 330 Identities = 173/456 (38%), Positives = 262/456 (57%), Gaps = 38/456 (8%) |
NCBI |
Show Blast
|
ProteinID | Description / BlastScore | Database | Actions |
XP_003079541.1 |
putative trehalase (ISS) [Ostreococcus tauri]
Evalue: 5e-114 | Bitscore: 417 Identities = 208/462 (45%), Positives = 296/462 (64%), Gaps = 28/462 (6%) |
NCBI |
Show Blast
|
XP_001418096.1 |
predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-114 | Bitscore: 417 Identities = 218/467 (47%), Positives = 293/467 (63%), Gaps = 38/467 (8%) |
NCBI |
Show Blast
|
XP_002502224.1 |
glycoside hydrolase family 37 protein [Micromonas sp. RCC299]
Evalue: 5e-95 | Bitscore: 354 Identities = 214/486 (44%), Positives = 279/486 (57%), Gaps = 68/486 (14%) |
NCBI |
Show Blast
|
ABO61746.1 |
trehalase [Physcomitrella patens subsp. patens]
Evalue: 2e-93 | Bitscore: 349 Identities = 193/458 (42%), Positives = 261/458 (57%), Gaps = 43/458 (9%) |
NCBI |
Show Blast
|
XP_002957229.1 |
hypothetical protein VOLCADRAFT_77459 [Volvox carteri f. nagariensis]
Evalue: 2e-92 | Bitscore: 346 Identities = 189/461 (41%), Positives = 257/461 (56%), Gaps = 35/461 (8%) |
NCBI |
Show Blast
|
XP_001775598.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-91 | Bitscore: 343 Identities = 184/456 (40%), Positives = 260/456 (57%), Gaps = 51/456 (11%) |
NCBI |
Show Blast
|
XP_001769611.1 |
predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-91 | Bitscore: 343 Identities = 191/458 (42%), Positives = 256/458 (56%), Gaps = 51/458 (11%) |
NCBI |
Show Blast
|
XP_002303675.1 |
predicted protein [Populus trichocarpa]
Evalue: 4e-91 | Bitscore: 341 Identities = 189/458 (41%), Positives = 263/458 (57%), Gaps = 50/458 (11%) |
NCBI |
Show Blast
|
XP_002303674.1 |
predicted protein [Populus trichocarpa]
Evalue: 6e-88 | Bitscore: 331 Identities = 184/456 (40%), Positives = 257/456 (56%), Gaps = 46/456 (10%) |
NCBI |
Show Blast
|
ABR17991.1 |
unknown [Picea sitchensis]
Evalue: 1e-87 | Bitscore: 330 Identities = 173/456 (38%), Positives = 262/456 (57%), Gaps = 38/456 (8%) |
NCBI |
Show Blast
|
No hits found against database Self with an e-value better than 1e-3. |
ProteinID | Description / BlastScore | Database | Actions |
Q8MMG9 |
Trehalase OS=Pimpla hypochondriaca GN=tre1 PE=1 SV=1
Evalue: 9e-65 | Bitscore: 249 Identities = 161/464 (34%), Positives = 233/464 (50%), Gaps = 67/464 (14%) |
SwissP |
Show Blast
|
Q54QZ5 |
Trehalase OS=Dictyostelium discoideum GN=treh PE=3 SV=1
Evalue: 3e-60 | Bitscore: 234 Identities = 154/471 (32%), Positives = 233/471 (49%), Gaps = 75/471 (15%) |
SwissP |
Show Blast
|
B7N408 |
Periplasmic trehalase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=treA PE=3 SV=1
Evalue: 5e-60 | Bitscore: 234 Identities = 158/463 (34%), Positives = 228/463 (49%), Gaps = 82/463 (17%) |
SwissP |
Show Blast
|
A1AAC5 |
Periplasmic trehalase OS=Escherichia coli O1:K1 / APEC GN=treA PE=3 SV=1
Evalue: 7e-60 | Bitscore: 233 Identities = 154/461 (33%), Positives = 229/461 (49%), Gaps = 78/461 (16%) |
SwissP |
Show Blast
|
Q1RCP3 |
Periplasmic trehalase OS=Escherichia coli (strain UTI89 / UPEC) GN=treA PE=3 SV=1
Evalue: 8e-60 | Bitscore: 233 Identities = 154/461 (33%), Positives = 229/461 (49%), Gaps = 78/461 (16%) |
SwissP |
Show Blast
|
B7MK99 |
Periplasmic trehalase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=treA PE=3 SV=1
Evalue: 8e-60 | Bitscore: 233 Identities = 154/461 (33%), Positives = 229/461 (49%), Gaps = 78/461 (16%) |
SwissP |
Show Blast
|
Q32H09 |
Periplasmic trehalase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=treA PE=3 SV=1
Evalue: 1e-59 | Bitscore: 232 Identities = 154/461 (33%), Positives = 228/461 (49%), Gaps = 78/461 (16%) |
SwissP |
Show Blast
|
P19813 |
Trehalase OS=Oryctolagus cuniculus GN=TREH PE=1 SV=1
Evalue: 6e-59 | Bitscore: 230 Identities = 160/461 (34%), Positives = 225/461 (48%), Gaps = 69/461 (14%) |
SwissP |
Show Blast
|
O43280 |
Trehalase OS=Homo sapiens GN=TREH PE=1 SV=2
Evalue: 3e-58 | Bitscore: 228 Identities = 162/461 (35%), Positives = 226/461 (49%), Gaps = 68/461 (14%) |
SwissP |
Show Blast
|
B4TXW7 |
Periplasmic trehalase OS=Salmonella schwarzengrund (strain CVM19633) GN=treA PE=3 SV=1
Evalue: 6e-57 | Bitscore: 223 Identities = 156/461 (33%), Positives = 227/461 (49%), Gaps = 78/461 (16%) |
SwissP |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Alternative Models
- n/a
-
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
EST ID | SuperContig_2.clus733.Contig1 |
Support Model | Y |
More Info |
Comment | EST is non-spliced and has no reliable strand information |
Mapping Location | 976974..977356 |
Strand + |
EST ID | SuperContig_2.clus540.Contig1 |
Support Model | Y |
More Info |
Mapping Location | 977767..978045 |
Strand - |
EST ID | SuperContig_2.clus884.Contig1 |
Support Model | Y |
More Info |
Mapping Location | 978102..978671 |
Strand - |
EST ID | SuperContig_2.clus346.Contig1 |
Support Model | Y |
More Info |
Comment | EST is non-spliced and has no reliable strand information |
Mapping Location | 980430..980888 |
Strand + |
|