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Bathycoccus prasinos


Gene ID
Bathy03g05120
Locus
Bathy03g05120
Functional Description
putative trehalase 1(B)
Gene Type
protein-coding gene
Contig
bathy_chrom_03
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
putative trehalase 1(B)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
IPR004046 Glutathione S-transferase, C-terminal InterPro
IPR017933 Glutathione S-transferase/chloride channel, C-terminal InterPro
IPR004045 Glutathione S-transferase, N-terminal InterPro
IPR018232 Glycoside hydrolase, family 37, conserved site InterPro
IPR001661 Glycoside hydrolase, family 37 InterPro
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
IPR012336 Thioredoxin-like fold InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003079541.1 putative trehalase (ISS) [Ostreococcus tauri]
Evalue: 5e-114 | Bitscore: 417
Identities = 208/462 (45%), Positives = 296/462 (64%), Gaps = 28/462 (6%)		 NCBI
Show Blast
XP_001418096.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-114 | Bitscore: 417
Identities = 218/467 (47%), Positives = 293/467 (63%), Gaps = 38/467 (8%)		 NCBI
Show Blast
XP_002502224.1 glycoside hydrolase family 37 protein [Micromonas sp. RCC299]
Evalue: 5e-95 | Bitscore: 354
Identities = 214/486 (44%), Positives = 279/486 (57%), Gaps = 68/486 (14%)		 NCBI
Show Blast
ABO61746.1 trehalase [Physcomitrella patens subsp. patens]
Evalue: 2e-93 | Bitscore: 349
Identities = 193/458 (42%), Positives = 261/458 (57%), Gaps = 43/458 (9%)		 NCBI
Show Blast
XP_002957229.1 hypothetical protein VOLCADRAFT_77459 [Volvox carteri f. nagariensis]
Evalue: 2e-92 | Bitscore: 346
Identities = 189/461 (41%), Positives = 257/461 (56%), Gaps = 35/461 (8%)		 NCBI
Show Blast
XP_001775598.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-91 | Bitscore: 343
Identities = 184/456 (40%), Positives = 260/456 (57%), Gaps = 51/456 (11%)		 NCBI
Show Blast
XP_001769611.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 1e-91 | Bitscore: 343
Identities = 191/458 (42%), Positives = 256/458 (56%), Gaps = 51/458 (11%)		 NCBI
Show Blast
XP_002303675.1 predicted protein [Populus trichocarpa]
Evalue: 4e-91 | Bitscore: 341
Identities = 189/458 (41%), Positives = 263/458 (57%), Gaps = 50/458 (11%)		 NCBI
Show Blast
XP_002303674.1 predicted protein [Populus trichocarpa]
Evalue: 6e-88 | Bitscore: 331
Identities = 184/456 (40%), Positives = 257/456 (56%), Gaps = 46/456 (10%)		 NCBI
Show Blast
ABR17991.1 unknown [Picea sitchensis]
Evalue: 1e-87 | Bitscore: 330
Identities = 173/456 (38%), Positives = 262/456 (57%), Gaps = 38/456 (8%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy03g05120
Redo Blast
CDS Length
4215 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy03g05120
Redo Blast
Protein Length
1405 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

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EST IDSuperContig_2.clus733.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_2.clus540.Contig1 Support ModelY More Info
EST IDSuperContig_2.clus884.Contig1 Support ModelY More Info
EST IDSuperContig_2.clus346.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information