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Bathycoccus prasinos


Gene ID
Bathy03g05000
Locus
Bathy03g05000
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_03
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
IPR017933 Glutathione S-transferase/chloride channel, C-terminal InterPro
IPR012336 Thioredoxin-like fold InterPro
IPR004045 Glutathione S-transferase, N-terminal InterPro
PTHR11260 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002500776.1 predicted protein [Micromonas sp. RCC299]
Evalue: 2e-32 | Bitscore: 144
Identities = 97/281 (35%), Positives = 143/281 (51%), Gaps = 49/281 (17%)		 NCBI
Show Blast
XP_003074896.1 unnamed protein product [Ostreococcus tauri]
Evalue: 3e-30 | Bitscore: 137
Identities = 101/283 (36%), Positives = 138/283 (49%), Gaps = 50/283 (18%)		 NCBI
Show Blast
XP_001418314.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-28 | Bitscore: 130
Identities = 100/284 (35%), Positives = 134/284 (47%), Gaps = 56/284 (20%)		 NCBI
Show Blast
XP_003059061.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 5e-26 | Bitscore: 123
Identities = 98/278 (35%), Positives = 137/278 (49%), Gaps = 46/278 (17%)		 NCBI
Show Blast
EFN59352.1 hypothetical protein CHLNCDRAFT_137800 [Chlorella variabilis]
Evalue: 4e-14 | Bitscore: 83
Identities = 76/282 (27%), Positives = 116/282 (41%), Gaps = 55/282 (20%)		 NCBI
Show Blast
YP_003887156.1 Glutathione S-transferase domain-containing protein [Cyanothece sp. PCC 7822]
Evalue: 2e-07 | Bitscore: 61
Identities = 69/278 (25%), Positives = 117/278 (42%), Gaps = 52/278 (19%)		 NCBI
Show Blast
3LFL Chain A, Crystal Structure Of Human Glutathione Transferase Omega 1, Delta 155
Evalue: 3e-07 | Bitscore: 60
Identities = 53/200 (27%), Positives = 90/200 (45%), Gaps = 39/200 (20%)		 NCBI
Show Blast
BAJ20927.1 glutathione S-transferase omega 1 [synthetic construct]
Evalue: 5e-07 | Bitscore: 60
Identities = 51/200 (26%), Positives = 89/200 (45%), Gaps = 38/200 (19%)		 NCBI
Show Blast
NP_004823.1 glutathione S-transferase omega-1 isoform 1 [Homo sapiens] sp|P78417.2|GSTO1_HUMAN RecName: Full=Glutathione S-transferase omega-1; Short=GSTO-1
Evalue: 5e-07 | Bitscore: 60
Identities = 52/200 (26%), Positives = 91/200 (46%), Gaps = 38/200 (19%)		 NCBI
Show Blast
CAD97673.1 hypothetical protein [Homo sapiens]
Evalue: 6e-07 | Bitscore: 59
Identities = 52/200 (26%), Positives = 91/200 (46%), Gaps = 38/200 (19%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy03g05000
Redo Blast
CDS Length
1095 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy03g05000
Redo Blast
Protein Length
365 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a