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Bathycoccus prasinos


Gene ID
Bathy03g04190
Locus
Bathy03g04190
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_03
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold InterPro
IPR003848 Domain of unknown function DUF218 InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002508760.1 predicted protein [Micromonas sp. RCC299]
Evalue: 4e-60 | Bitscore: 236
Identities = 118/234 (50%), Positives = 154/234 (66%), Gaps = 20/234 (9%)
NCBI
Show Blast
XP_001417809.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 6e-54 | Bitscore: 215
Identities = 125/219 (57%), Positives = 150/219 (68%), Gaps = 8/219 (4%)
NCBI
Show Blast
XP_003079443.1 unnamed protein product [Ostreococcus tauri]
Evalue: 5e-53 | Bitscore: 212
Identities = 122/217 (56%), Positives = 143/217 (66%), Gaps = 6/217 (3%)
NCBI
Show Blast
XP_001699147.1 hypothetical protein CHLREDRAFT_185300 [Chlamydomonas reinhardtii]
Evalue: 6e-32 | Bitscore: 142
Identities = 84/213 (39%), Positives = 116/213 (54%), Gaps = 7/213 (3%)
NCBI
Show Blast
XP_001757921.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 3e-31 | Bitscore: 140
Identities = 84/229 (37%), Positives = 119/229 (52%), Gaps = 23/229 (10%)
NCBI
Show Blast
XP_002950917.1 hypothetical protein VOLCADRAFT_104906 [Volvox carteri f. nagariensis]
Evalue: 1e-25 | Bitscore: 121
Identities = 70/167 (42%), Positives = 95/167 (57%), Gaps = 6/167 (4%)
NCBI
Show Blast
EFN54045.1 hypothetical protein CHLNCDRAFT_136117 [Chlorella variabilis]
Evalue: 1e-23 | Bitscore: 114
Identities = 81/281 (29%), Positives = 122/281 (43%), Gaps = 64/281 (23%)
NCBI
Show Blast
XP_002180824.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 5e-19 | Bitscore: 99
Identities = 74/243 (30%), Positives = 113/243 (47%), Gaps = 21/243 (9%)
NCBI
Show Blast
XP_002290392.1 predicted protein [Thalassiosira pseudonana CCMP1335]
Evalue: 9e-14 | Bitscore: 82
Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 17/219 (8%)
NCBI
Show Blast
ABD74926.1 hypothetical protein [Sinorhizobium fredii]
Evalue: 6e-06 | Bitscore: 56
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 0/66 (0%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy03g04190
Redo Blast
CDS Length
939 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy03g04190
Redo Blast
Protein Length
313 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a