- Gene ID
- Bathy03g01690
- Locus
- Bathy03g01690
- Functional Description
- predicted protein
- Gene Type
- protein-coding gene
- Contig
- bathy_chrom_03
- Last Modified On
- 12 July 2011 21h39
- History
-
Annotator
- Name
- EuGene Automatic Prediction
- Email
- beg-orcae@psb.ugent.be
- Lab
- UGent
- Status
- active
Gene Actions
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pico-PLAZA - lookup this gene in the PLAZA resource |
Gene Function
- Short Name
- n/a
- Alternative Names
- n/a
- Definition
- predicted protein
- Additional Functional Description
- n/a
- Pubmed ID
- n/a
- EC Number
- n/a
- KOGid
- n/a
Gene Ontology
- Cellular Component
-
1.
nucleus
- Molecular Function
-
1.
DNA binding
- Biological Process
-
n/a
Protein Domains
| Domain ID | Description | Database |
|---|
|
IPR004333 |
Transcription factor, SBP-box |
InterPro |
Protein Homologs
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| XP_002890724.1 |
hypothetical protein ARALYDRAFT_890257 [Arabidopsis lyrata subsp. lyrata]
Evalue: 3e-11 | Bitscore: 76
Identities = 43/131 (33%), Positives = 70/131 (53%), Gaps = 5/131 (4%) |
NCBI |
Show Blast
|
| XP_001699939.1 |
squamosa promoter binding protein [Chlamydomonas reinhardtii]
Evalue: 2e-10 | Bitscore: 73
Identities = 31/63 (49%), Positives = 39/63 (62%), Gaps = 2/63 (3%) |
NCBI |
Show Blast
|
| BAJ34478.1 |
unnamed protein product [Thellungiella halophila]
Evalue: 3e-10 | Bitscore: 73
Identities = 43/134 (32%), Positives = 72/134 (54%), Gaps = 6/134 (4%) |
NCBI |
Show Blast
|
| XP_002878311.1 |
hypothetical protein ARALYDRAFT_907523 [Arabidopsis lyrata subsp. lyrata]
Evalue: 4e-10 | Bitscore: 72
Identities = 52/177 (29%), Positives = 88/177 (50%), Gaps = 9/177 (5%) |
NCBI |
Show Blast
|
| XP_002893462.1 |
hypothetical protein ARALYDRAFT_472939 [Arabidopsis lyrata subsp. lyrata]
Evalue: 5e-10 | Bitscore: 72
Identities = 35/90 (39%), Positives = 56/90 (62%), Gaps = 3/90 (3%) |
NCBI |
Show Blast
|
| AAF99748.1 |
F17L21.15 [Arabidopsis thaliana]
Evalue: 7e-10 | Bitscore: 72
Identities = 33/82 (40%), Positives = 53/82 (65%), Gaps = 3/82 (4%) |
NCBI |
Show Blast
|
| NP_174057.2 |
squamosa promoter-binding protein-like 10 (SPL10) [Arabidopsis thaliana]
Evalue: 8e-10 | Bitscore: 72
Identities = 33/82 (40%), Positives = 53/82 (65%), Gaps = 3/82 (4%) |
NCBI |
Show Blast
|
| Q8S9L0 |
Squamosa promoter-binding-like protein 10 OS=Arabidopsis thaliana GN=SPL10 PE=2 SV=2
Evalue: 5e-11 | Bitscore: 71
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 3/79 (3%) |
SwissP |
Show Blast
|
| Q9S7A9 |
Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1
Evalue: 5e-11 | Bitscore: 71
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 6/96 (6%) |
SwissP |
Show Blast
|
| AAL75905.1 |
At1g27370/F17L21_16 [Arabidopsis thaliana]
Evalue: 8e-10 | Bitscore: 71
Identities = 33/82 (40%), Positives = 53/82 (65%), Gaps = 3/82 (4%) |
NCBI |
Show Blast
|
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| XP_002890724.1 |
hypothetical protein ARALYDRAFT_890257 [Arabidopsis lyrata subsp. lyrata]
Evalue: 3e-11 | Bitscore: 76
Identities = 43/131 (33%), Positives = 70/131 (53%), Gaps = 5/131 (4%) |
NCBI |
Show Blast
|
| XP_001699939.1 |
squamosa promoter binding protein [Chlamydomonas reinhardtii]
Evalue: 2e-10 | Bitscore: 73
Identities = 31/63 (49%), Positives = 39/63 (62%), Gaps = 2/63 (3%) |
NCBI |
Show Blast
|
| BAJ34478.1 |
unnamed protein product [Thellungiella halophila]
Evalue: 3e-10 | Bitscore: 73
Identities = 43/134 (32%), Positives = 72/134 (54%), Gaps = 6/134 (4%) |
NCBI |
Show Blast
|
| XP_002878311.1 |
hypothetical protein ARALYDRAFT_907523 [Arabidopsis lyrata subsp. lyrata]
Evalue: 4e-10 | Bitscore: 72
Identities = 52/177 (29%), Positives = 88/177 (50%), Gaps = 9/177 (5%) |
NCBI |
Show Blast
|
| XP_002893462.1 |
hypothetical protein ARALYDRAFT_472939 [Arabidopsis lyrata subsp. lyrata]
Evalue: 5e-10 | Bitscore: 72
Identities = 35/90 (39%), Positives = 56/90 (62%), Gaps = 3/90 (3%) |
NCBI |
Show Blast
|
| AAF99748.1 |
F17L21.15 [Arabidopsis thaliana]
Evalue: 7e-10 | Bitscore: 72
Identities = 33/82 (40%), Positives = 53/82 (65%), Gaps = 3/82 (4%) |
NCBI |
Show Blast
|
| NP_174057.2 |
squamosa promoter-binding protein-like 10 (SPL10) [Arabidopsis thaliana]
Evalue: 8e-10 | Bitscore: 72
Identities = 33/82 (40%), Positives = 53/82 (65%), Gaps = 3/82 (4%) |
NCBI |
Show Blast
|
| AAL75905.1 |
At1g27370/F17L21_16 [Arabidopsis thaliana]
Evalue: 8e-10 | Bitscore: 71
Identities = 33/82 (40%), Positives = 53/82 (65%), Gaps = 3/82 (4%) |
NCBI |
Show Blast
|
| AAF99733.1 |
F17L21.14 [Arabidopsis thaliana]
Evalue: 8e-10 | Bitscore: 71
Identities = 34/79 (43%), Positives = 51/79 (65%), Gaps = 3/79 (4%) |
NCBI |
Show Blast
|
| NP_564280.1 |
squamosa promoter-binding protein-like 11 (SPL11) [Arabidopsis thaliana]
Evalue: 1e-09 | Bitscore: 71
Identities = 34/79 (43%), Positives = 51/79 (65%), Gaps = 3/79 (4%) |
NCBI |
Show Blast
|
| No hits found against database Self with an e-value better than 1e-3. |
| ProteinID | Description / BlastScore | Database | Actions |
|---|
| Q8S9L0 |
Squamosa promoter-binding-like protein 10 OS=Arabidopsis thaliana GN=SPL10 PE=2 SV=2
Evalue: 5e-11 | Bitscore: 71
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 3/79 (3%) |
SwissP |
Show Blast
|
| Q9S7A9 |
Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1
Evalue: 5e-11 | Bitscore: 71
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 6/96 (6%) |
SwissP |
Show Blast
|
| Q9FZK0 |
Squamosa promoter-binding-like protein 11 OS=Arabidopsis thaliana GN=SPL11 PE=2 SV=2
Evalue: 8e-11 | Bitscore: 70
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 3/79 (3%) |
SwissP |
Show Blast
|
| Q9S7P5 |
Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1
Evalue: 2e-10 | Bitscore: 69
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 7/151 (4%) |
SwissP |
Show Blast
|
| Q9SMX9 |
Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2
Evalue: 2e-10 | Bitscore: 69
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 6/83 (7%) |
SwissP |
Show Blast
|
| Q7XT42 |
Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. japonica GN=SPL7 PE=2 SV=2
Evalue: 4e-10 | Bitscore: 68
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 2/67 (2%) |
SwissP |
Show Blast
|
| Q38741 |
Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1
Evalue: 9e-10 | Bitscore: 67
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 2/66 (3%) |
SwissP |
Show Blast
|
| Q5Z818 |
Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. japonica GN=SPL12 PE=2 SV=1
Evalue: 1e-09 | Bitscore: 66
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 4/90 (4%) |
SwissP |
Show Blast
|
| A2YGR5 |
Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1
Evalue: 1e-09 | Bitscore: 66
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 4/90 (4%) |
SwissP |
Show Blast
|
| Q9S840 |
Squamosa promoter-binding-like protein 2 OS=Arabidopsis thaliana GN=SPL2 PE=2 SV=1
Evalue: 3e-09 | Bitscore: 65
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 9/135 (6%) |
SwissP |
Show Blast
|
Gene Structure
View in GenomeView| View in Artemini
Download gene in EMBL format
- Structure
- Sequence Type
- mRNA
- Strand
- -
- Structure Quality
- 2
Alternative Models
- n/a
-
Protein
Associated ESTs/cDNAs
View in GenomeView| View in Artemini
| EST ID | SuperContig_2.clus832.Contig1 |
Support Model | Y |
More Info |
| Mapping Location | 305458..305857 |
Strand - |
| EST ID | SuperContig_2.clus624.Contig1 |
Support Model | Y |
More Info |
| Mapping Location | 306290..306649 |
Strand - |
| EST ID | SuperContig_2.clus547.Contig1 |
Support Model | Y |
More Info |
| Mapping Location | 308663..308923 |
Strand - |
|
