Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy03g01090
Locus
Bathy03g01090
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_03
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
PTHR23064 FAMILY NOT NAMED HMMPanther
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
IPR002048 Calcium-binding EF-hand InterPro
IPR011992 EF-hand-like domain InterPro
IPR018248 EF-hand InterPro
G3DSA:3.60.21.10 no description Gene3D

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002505870.1 predicted protein [Micromonas sp. RCC299]
Evalue: 6e-91 | Bitscore: 339
Identities = 190/368 (52%), Positives = 251/368 (68%), Gaps = 12/368 (3%)
NCBI
Show Blast
XP_001417937.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-69 | Bitscore: 266
Identities = 163/296 (55%), Positives = 193/296 (65%), Gaps = 17/296 (6%)
NCBI
Show Blast
XP_003057644.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-60 | Bitscore: 238
Identities = 115/187 (61%), Positives = 143/187 (76%), Gaps = 5/187 (3%)
NCBI
Show Blast
XP_003079203.1 unnamed protein product [Ostreococcus tauri]
Evalue: 2e-60 | Bitscore: 238
Identities = 142/254 (56%), Positives = 172/254 (68%), Gaps = 17/254 (7%)
NCBI
Show Blast
YP_001611606.1 hypothetical protein sce0969 [Sorangium cellulosum 'So ce 56']
Evalue: 6e-17 | Bitscore: 93
Identities = 53/168 (32%), Positives = 73/168 (43%), Gaps = 9/168 (5%)
NCBI
Show Blast
XP_002951575.1 hypothetical protein VOLCADRAFT_92025 [Volvox carteri f. nagariensis]
Evalue: 0.0008 | Bitscore: 50
Identities = 19/43 (44%), Positives = 30/43 (70%), Gaps = 2/43 (5%)
NCBI
Show Blast
EFN54106.1 hypothetical protein CHLNCDRAFT_136255 [Chlorella variabilis]
Evalue: 0.003 | Bitscore: 48
Identities = 18/40 (45%), Positives = 25/40 (63%), Gaps = 0/40 (0%)
NCBI
Show Blast
EFN59173.1 hypothetical protein CHLNCDRAFT_50022 [Chlorella variabilis]
Evalue: 0.005 | Bitscore: 47
Identities = 17/52 (33%), Positives = 28/52 (54%), Gaps = 0/52 (0%)
NCBI
Show Blast
XP_001695306.1 predicted protein [Chlamydomonas reinhardtii]
Evalue: 0.008 | Bitscore: 46
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 0/41 (0%)
NCBI
Show Blast
NP_001152603.1 polcalcin Jun o 2 [Zea mays]
Evalue: 0.008 | Bitscore: 46
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 8/75 (11%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy03g01090
Redo Blast
CDS Length
1374 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy03g01090
Redo Blast
Protein Length
458 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a