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Bathycoccus prasinos


Gene ID
Bathy02g05190
Locus
Bathy02g05190
Functional Description
unnamed protein product
Gene Type
protein-coding gene
Contig
bathy_chrom_02
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
unnamed protein product
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
calcium ion binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
G3DSA:3.40.50.300 no description Gene3D
IPR000261 EPS15 homology (EH) InterPro
IPR018249 EF-HAND 2 InterPro
IPR011992 EF-hand-like domain InterPro
IPR001401 Dynamin, GTPase domain InterPro
PTHR11216 FAMILY NOT NAMED HMMPanther
SSF47473 EF-hand superfamily

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003055188.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 660
Identities = 328/557 (59%), Positives = 401/557 (72%), Gaps = 55/557 (10%)		 NCBI
Show Blast
XP_002277794.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-154 | Bitscore: 551
Identities = 277/544 (51%), Positives = 370/544 (68%), Gaps = 16/544 (3%)		 NCBI
Show Blast
XP_002499973.1 predicted protein [Micromonas sp. RCC299]
Evalue: 2e-154 | Bitscore: 550
Identities = 262/396 (66%), Positives = 313/396 (79%), Gaps = 1/396 (0%)		 NCBI
Show Blast
BAJ95881.1 predicted protein [Hordeum vulgare subsp. vulgare]
Evalue: 9e-154 | Bitscore: 548
Identities = 283/543 (52%), Positives = 363/543 (67%), Gaps = 17/543 (3%)		 NCBI
Show Blast
XP_002531194.1 EH-domain-containing protein, putative [Ricinus communis]
Evalue: 9e-153 | Bitscore: 545
Identities = 285/553 (52%), Positives = 370/553 (67%), Gaps = 29/553 (5%)		 NCBI
Show Blast
XP_002264320.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 2e-152 | Bitscore: 543
Identities = 276/544 (51%), Positives = 364/544 (67%), Gaps = 16/544 (3%)		 NCBI
Show Blast
XP_002447292.1 hypothetical protein SORBIDRAFT_06g032210 [Sorghum bicolor]
Evalue: 5e-152 | Bitscore: 542
Identities = 278/541 (51%), Positives = 361/541 (67%), Gaps = 21/541 (4%)		 NCBI
Show Blast
NP_001045954.1 Os02g0158100 [Oryza sativa Japonica Group]
Evalue: 6e-152 | Bitscore: 542
Identities = 277/543 (51%), Positives = 364/543 (67%), Gaps = 15/543 (3%)		 NCBI
Show Blast
NP_001167939.1 hypothetical protein LOC100381653 [Zea mays]
Evalue: 3e-151 | Bitscore: 540
Identities = 279/545 (51%), Positives = 362/545 (66%), Gaps = 28/545 (5%)		 NCBI
Show Blast
XP_002518408.1 EH-domain-containing protein, putative [Ricinus communis]
Evalue: 8e-151 | Bitscore: 538
Identities = 272/544 (50%), Positives = 365/544 (67%), Gaps = 16/544 (3%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy02g05190
Redo Blast
CDS Length
1647 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy02g05190
Redo Blast
Protein Length
549 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_1.clus762.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_1.clus535.Contig1 Support ModelY More Info