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Bathycoccus prasinos


Gene ID
Bathy02g04230
Locus
Bathy02g04230
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_02
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
calcium ion binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
PTHR10891 EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN HMMPanther
IPR011992 EF-hand-like domain InterPro
SSF47473 EF-hand superfamily

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001420718.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 684
Identities = 318/458 (69%), Positives = 378/458 (83%), Gaps = 2/458 (0%)		 NCBI
Show Blast
EGB12942.1 hypothetical protein AURANDRAFT_60865 [Aureococcus anophagefferens]
Evalue: 5e-41 | Bitscore: 173
Identities = 116/393 (30%), Positives = 185/393 (47%), Gaps = 30/393 (8%)		 NCBI
Show Blast
EFW45933.1 predicted protein [Capsaspora owczarzaki ATCC 30864]
Evalue: 1e-16 | Bitscore: 92
Identities = 94/380 (25%), Positives = 147/380 (39%), Gaps = 72/380 (19%)		 NCBI
Show Blast
XP_002577986.1 programmed cell death protein [Schistosoma mansoni]
Evalue: 0.001 | Bitscore: 49
Identities = 26/73 (36%), Positives = 40/73 (55%), Gaps = 1/73 (1%)		 NCBI
Show Blast
XP_002431949.1 conserved hypothetical protein [Pediculus humanus corporis]
Evalue: 0.003 | Bitscore: 48
Identities = 32/124 (26%), Positives = 56/124 (45%), Gaps = 36/124 (29%)		 NCBI
Show Blast
CAQ86680.1 putative fimbrin [Histomonas meleagridis]
Evalue: 0.009 | Bitscore: 46
Identities = 43/156 (28%), Positives = 70/156 (45%), Gaps = 18/156 (12%)		 NCBI
Show Blast
CBN78992.1 Calcium-dependent protein kinase 2 (PfCDPK2) [Ectocarpus siliculosus]
Evalue: 0.01 | Bitscore: 46
Identities = 25/68 (37%), Positives = 36/68 (53%), Gaps = 5/68 (7%)		 NCBI
Show Blast
XP_001698243.1 flagella associated protein [Chlamydomonas reinhardtii]
Evalue: 0.018 | Bitscore: 45
Identities = 24/59 (41%), Positives = 34/59 (58%), Gaps = 1/59 (2%)		 NCBI
Show Blast
CBJ48459.1 protein tyrosine phosphatase, receptor type [Ectocarpus siliculosus]
Evalue: 0.027 | Bitscore: 45
Identities = 32/105 (30%), Positives = 46/105 (44%), Gaps = 3/105 (3%)		 NCBI
Show Blast
XP_003078254.1 putative calcium dependent protein kinase (ISS) [Ostreococcus tauri]
Evalue: 0.037 | Bitscore: 44
Identities = 27/82 (33%), Positives = 40/82 (49%), Gaps = 2/82 (2%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy02g04230
Redo Blast
CDS Length
1443 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy02g04230
Redo Blast
Protein Length
481 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a