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Bathycoccus prasinos


Gene ID
Bathy02g02830
Locus
Bathy02g02830
Functional Description
KpsF/GutQ family protein
Gene Type
protein-coding gene
Contig
bathy_chrom_02
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
KpsF/GutQ family protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR001347 Sugar isomerase (SIS) InterPro
G3DSA:3.10.580.10 no description Gene3D
PTHR10937 GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING HMMPanther
G3DSA:3.40.50.10490 no description Gene3D
IPR000644 Cystathionine beta-synthase, core InterPro
SSF53697 SIS domain superfamily

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001781077.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 6e-83 | Bitscore: 312
Identities = 160/337 (47%), Positives = 221/337 (66%), Gaps = 21/337 (6%)		 NCBI
Show Blast
ADE75818.1 unknown [Picea sitchensis]
Evalue: 1e-81 | Bitscore: 307
Identities = 157/337 (47%), Positives = 221/337 (66%), Gaps = 20/337 (6%)		 NCBI
Show Blast
XP_002532039.1 Polysialic acid capsule expression protein kpsF, putative [Ricinus communis]
Evalue: 4e-80 | Bitscore: 303
Identities = 161/347 (46%), Positives = 223/347 (64%), Gaps = 20/347 (6%)		 NCBI
Show Blast
XP_002967382.1 hypothetical protein SELMODRAFT_86704 [Selaginella moellendorffii]
Evalue: 3e-79 | Bitscore: 300
Identities = 159/337 (47%), Positives = 215/337 (64%), Gaps = 20/337 (6%)		 NCBI
Show Blast
XP_002306858.1 predicted protein [Populus trichocarpa]
Evalue: 4e-79 | Bitscore: 299
Identities = 158/343 (46%), Positives = 217/343 (63%), Gaps = 20/343 (6%)		 NCBI
Show Blast
XP_002960330.1 hypothetical protein SELMODRAFT_75684 [Selaginella moellendorffii]
Evalue: 1e-78 | Bitscore: 298
Identities = 158/337 (47%), Positives = 214/337 (64%), Gaps = 20/337 (6%)		 NCBI
Show Blast
EFN54002.1 hypothetical protein CHLNCDRAFT_136008 [Chlorella variabilis]
Evalue: 3e-78 | Bitscore: 296
Identities = 165/367 (45%), Positives = 224/367 (61%), Gaps = 47/367 (13%)		 NCBI
Show Blast
XP_002302040.1 predicted protein [Populus trichocarpa]
Evalue: 3e-78 | Bitscore: 296
Identities = 156/345 (45%), Positives = 218/345 (63%), Gaps = 20/345 (6%)		 NCBI
Show Blast
XP_002876265.1 sugar isomerase domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Evalue: 8e-76 | Bitscore: 288
Identities = 159/343 (46%), Positives = 217/343 (63%), Gaps = 20/343 (6%)		 NCBI
Show Blast
XP_002277616.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 3e-75 | Bitscore: 286
Identities = 153/345 (44%), Positives = 215/345 (62%), Gaps = 22/345 (6%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy02g02830
Redo Blast
CDS Length
1098 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy02g02830
Redo Blast
Protein Length
366 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_1.clus693.Contig1 Support ModelY More Info