Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy02g01830
Locus
Bathy02g01830
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_02
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR017441 Protein kinase, ATP binding site InterPro
PTHR24347 FAMILY NOT NAMED HMMPanther
IPR018247 EF-Hand 1, calcium-binding site InterPro
G3DSA:3.30.200.20 no description Gene3D
IPR002290 Serine/threonine-protein kinase domain InterPro
IPR011992 EF-hand-like domain InterPro
IPR002048 Calcium-binding EF-hand InterPro
IPR017442 Serine/threonine-protein kinase-like domain InterPro
IPR000719 Protein kinase, catalytic domain InterPro
IPR018249 EF-HAND 2 InterPro
G3DSA:1.10.510.10 no description Gene3D
IPR020635 Tyrosine-protein kinase, catalytic domain InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003083265.1 putative calcium dependent protein kinase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 653
Identities = 339/571 (59%), Positives = 417/571 (73%), Gaps = 48/571 (8%)
NCBI
Show Blast
XP_002501944.1 predicted protein [Micromonas sp. RCC299]
Evalue: 1e-180 | Bitscore: 638
Identities = 345/586 (59%), Positives = 424/586 (72%), Gaps = 35/586 (6%)
NCBI
Show Blast
XP_003057593.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 1e-164 | Bitscore: 585
Identities = 324/547 (59%), Positives = 392/547 (72%), Gaps = 54/547 (10%)
NCBI
Show Blast
XP_001421419.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-159 | Bitscore: 567
Identities = 305/493 (62%), Positives = 372/493 (75%), Gaps = 42/493 (9%)
NCBI
Show Blast
XP_001694223.1 predicted protein [Chlamydomonas reinhardtii]
Evalue: 4e-85 | Bitscore: 320
Identities = 180/448 (40%), Positives = 266/448 (59%), Gaps = 64/448 (14%)
NCBI
Show Blast
XP_002950413.1 hypothetical protein VOLCADRAFT_81022 [Volvox carteri f. nagariensis]
Evalue: 2e-77 | Bitscore: 295
Identities = 189/495 (38%), Positives = 276/495 (56%), Gaps = 61/495 (12%)
NCBI
Show Blast
EFN55861.1 hypothetical protein CHLNCDRAFT_35323 [Chlorella variabilis]
Evalue: 2e-71 | Bitscore: 275
Identities = 168/480 (35%), Positives = 248/480 (52%), Gaps = 68/480 (14%)
NCBI
Show Blast
XP_001696989.1 hypothetical protein CHLREDRAFT_131294 [Chlamydomonas reinhardtii]
Evalue: 9e-70 | Bitscore: 270
Identities = 169/466 (36%), Positives = 248/466 (53%), Gaps = 37/466 (8%)
NCBI
Show Blast
XP_001696276.1 hypothetical protein CHLREDRAFT_112697 [Chlamydomonas reinhardtii]
Evalue: 5e-69 | Bitscore: 267
Identities = 187/515 (36%), Positives = 252/515 (49%), Gaps = 77/515 (15%)
NCBI
Show Blast
XP_002953512.1 hypothetical protein VOLCADRAFT_105941 [Volvox carteri f. nagariensis]
Evalue: 4e-68 | Bitscore: 264
Identities = 193/540 (36%), Positives = 282/540 (52%), Gaps = 53/540 (10%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy02g01830
Redo Blast
CDS Length
2427 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy02g01830
Redo Blast
Protein Length
809 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_1.clus510.Contig1 Support ModelY More Info