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Bathycoccus prasinos


Gene ID
Bathy02g00860
Locus
Bathy02g00860
Functional Description
NADH-ubiquinone oxidoreductase 105 kDa subunit
Gene Type
protein-coding gene
Contig
bathy_chrom_02
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
NADH-ubiquinone oxidoreductase 105 kDa subunit
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR007741 Ribosomal protein/NADH dehydrogenase domain InterPro
IPR016464 NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2 InterPro
PTHR12878 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002504987.1 predicted protein [Micromonas sp. RCC299]
Evalue: 3e-28 | Bitscore: 128
Identities = 64/92 (70%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
NCBI
Show Blast
XP_003060621.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-28 | Bitscore: 127
Identities = 63/92 (68%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
NCBI
Show Blast
XP_001421496.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 8e-28 | Bitscore: 126
Identities = 61/91 (67%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
NCBI
Show Blast
XP_003083350.1 NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit (ISS) [Ostreococcus tauri]
Evalue: 1e-26 | Bitscore: 122
Identities = 60/91 (66%), Positives = 69/91 (76%), Gaps = 1/91 (1%)
NCBI
Show Blast
EFN54649.1 hypothetical protein CHLNCDRAFT_31601 [Chlorella variabilis]
Evalue: 8e-21 | Bitscore: 103
Identities = 46/83 (55%), Positives = 64/83 (77%), Gaps = 0/83 (0%)
NCBI
Show Blast
XP_366593.2 hypothetical protein MGG_02669 [Magnaporthe oryzae 70-15]
Evalue: 1e-20 | Bitscore: 102
Identities = 46/91 (51%), Positives = 65/91 (71%), Gaps = 0/91 (0%)
NCBI
Show Blast
ACI68755.1 NADH dehydrogenase 1 alpha subcomplex subunit 2 [Salmo salar]
Evalue: 2e-20 | Bitscore: 102
Identities = 45/83 (54%), Positives = 65/83 (78%), Gaps = 0/83 (0%)
NCBI
Show Blast
XP_001522295.1 hypothetical protein MGCH7_ch7g402 [Magnaporthe oryzae 70-15]
Evalue: 2e-20 | Bitscore: 102
Identities = 46/91 (51%), Positives = 65/91 (71%), Gaps = 0/91 (0%)
NCBI
Show Blast
XP_001512375.1 PREDICTED: similar to NADH dehydrogenase [Ornithorhynchus anatinus]
Evalue: 2e-19 | Bitscore: 99
Identities = 47/81 (58%), Positives = 58/81 (72%), Gaps = 0/81 (0%)
NCBI
Show Blast
CBI55515.1 unnamed protein product [Sordaria macrospora]
Evalue: 2e-19 | Bitscore: 99
Identities = 44/91 (48%), Positives = 66/91 (73%), Gaps = 0/91 (0%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy02g00860
Redo Blast
CDS Length
276 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy02g00860
Redo Blast
Protein Length
92 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a