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Bathycoccus prasinos


Gene ID
Bathy01g06230
Locus
Bathy01g06230
Functional Description
glutathione s-transferase
Gene Type
protein-coding gene
Contig
bathy_chrom_01
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
glutathione s-transferase
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
IPR004046 Glutathione S-transferase, C-terminal InterPro
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
IPR017933 Glutathione S-transferase/chloride channel, C-terminal InterPro
IPR004045 Glutathione S-transferase, N-terminal InterPro
IPR012336 Thioredoxin-like fold InterPro
PTHR11260 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002507970.1 glutathione s-transferase [Micromonas sp. RCC299]
Evalue: 2e-76 | Bitscore: 290
Identities = 132/243 (54%), Positives = 179/243 (74%), Gaps = 2/243 (1%)		 NCBI
Show Blast
XP_003058584.1 glutathione s-transferase [Micromonas pusilla CCMP1545]
Evalue: 2e-69 | Bitscore: 266
Identities = 134/246 (54%), Positives = 171/246 (70%), Gaps = 4/246 (2%)		 NCBI
Show Blast
XP_001691033.1 glutathione S-transferase [Chlamydomonas reinhardtii]
Evalue: 8e-67 | Bitscore: 258
Identities = 125/243 (51%), Positives = 164/243 (67%), Gaps = 5/243 (2%)		 NCBI
Show Blast
XP_001419432.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-54 | Bitscore: 218
Identities = 121/253 (48%), Positives = 156/253 (62%), Gaps = 7/253 (3%)		 NCBI
Show Blast
XP_003080929.1 COG0625: Glutathione S-transferase (ISS) [Ostreococcus tauri]
Evalue: 1e-53 | Bitscore: 214
Identities = 114/243 (47%), Positives = 151/243 (62%), Gaps = 7/243 (3%)		 NCBI
Show Blast
EFN52904.1 hypothetical protein CHLNCDRAFT_54240 [Chlorella variabilis]
Evalue: 5e-52 | Bitscore: 209
Identities = 113/245 (46%), Positives = 153/245 (62%), Gaps = 8/245 (3%)		 NCBI
Show Blast
XP_002948294.1 hypothetical protein VOLCADRAFT_88491 [Volvox carteri f. nagariensis]
Evalue: 5e-51 | Bitscore: 206
Identities = 106/243 (44%), Positives = 138/243 (57%), Gaps = 41/243 (17%)		 NCBI
Show Blast
CBN80298.1 glutathione s-transferase [Ectocarpus siliculosus]
Evalue: 1e-36 | Bitscore: 158
Identities = 91/238 (38%), Positives = 131/238 (55%), Gaps = 8/238 (3%)		 NCBI
Show Blast
ZP_05125123.1 maleylacetoacetate isomerase [Rhodobacteraceae bacterium KLH11]
Evalue: 3e-15 | Bitscore: 87
Identities = 65/195 (33%), Positives = 99/195 (51%), Gaps = 15/195 (8%)		 NCBI
Show Blast
YP_001870082.1 glutathione S-transferase domain-containing protein [Nostoc punctiforme PCC 73102]
Evalue: 2e-13 | Bitscore: 81
Identities = 62/209 (30%), Positives = 99/209 (47%), Gaps = 13/209 (6%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy01g06230
Redo Blast
CDS Length
1005 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy01g06230
Redo Blast
Protein Length
335 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_0.clus320.Contig2 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information