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Bathycoccus prasinos


Gene ID
Bathy01g05400
Locus
Bathy01g05400
Functional Description
glutathione S-transferase
Gene Type
protein-coding gene
Contig
bathy_chrom_01
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
glutathione S-transferase
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
IPR017933 Glutathione S-transferase/chloride channel, C-terminal InterPro
IPR004045 Glutathione S-transferase, N-terminal InterPro
PTHR11260 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003080812.1 Glutathione S-transferase (ISS) [Ostreococcus tauri]
Evalue: 9e-148 | Bitscore: 528
Identities = 264/441 (60%), Positives = 319/441 (72%), Gaps = 27/441 (6%)		 NCBI
Show Blast
XP_003058542.1 intracellular chloride channel family [Micromonas pusilla CCMP1545]
Evalue: 7e-147 | Bitscore: 525
Identities = 255/428 (60%), Positives = 313/428 (73%), Gaps = 9/428 (2%)		 NCBI
Show Blast
XP_002501755.1 intracellular chloride channel family [Micromonas sp. RCC299]
Evalue: 1e-136 | Bitscore: 491
Identities = 255/428 (60%), Positives = 307/428 (72%), Gaps = 7/428 (2%)		 NCBI
Show Blast
XP_001419151.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-125 | Bitscore: 452
Identities = 227/398 (57%), Positives = 274/398 (69%), Gaps = 51/398 (13%)		 NCBI
Show Blast
CBJ25907.1 putative Glutathione S-transferase [Ectocarpus siliculosus]
Evalue: 3e-110 | Bitscore: 403
Identities = 224/457 (49%), Positives = 275/457 (60%), Gaps = 41/457 (9%)		 NCBI
Show Blast
XP_001690194.1 glutathione S-transferase [Chlamydomonas reinhardtii]
Evalue: 4e-85 | Bitscore: 320
Identities = 183/404 (45%), Positives = 230/404 (57%), Gaps = 19/404 (5%)		 NCBI
Show Blast
XP_002289516.1 hypothetical protein THAPSDRAFT_268773 [Thalassiosira pseudonana CCMP1335]
Evalue: 6e-85 | Bitscore: 319
Identities = 193/494 (39%), Positives = 276/494 (56%), Gaps = 74/494 (15%)		 NCBI
Show Blast
XP_003074072.1 COG0625: Glutathione S-transferase (ISS) [Ostreococcus tauri]
Evalue: 9e-82 | Bitscore: 308
Identities = 176/401 (44%), Positives = 240/401 (60%), Gaps = 24/401 (6%)		 NCBI
Show Blast
XP_002507387.1 glutathione s-transferase [Micromonas sp. RCC299]
Evalue: 2e-80 | Bitscore: 304
Identities = 189/429 (44%), Positives = 242/429 (56%), Gaps = 48/429 (11%)		 NCBI
Show Blast
XP_001415712.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-73 | Bitscore: 281
Identities = 172/435 (40%), Positives = 238/435 (55%), Gaps = 53/435 (12%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy01g05400
Redo Blast
CDS Length
1356 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy01g05400
Redo Blast
Protein Length
452 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_0.clus1075.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information