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Bathycoccus prasinos


Gene ID
Bathy01g04970
Locus
Bathy01g04970
Functional Description
seryl-tRNA synthetase
Gene Type
protein-coding gene
Contig
bathy_chrom_01
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
seryl-tRNA synthetase
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR010978 tRNA-binding arm InterPro
IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain InterPro
IPR015866 Seryl-tRNA synthetase, class IIa, N-terminal InterPro
IPR012335 Thioredoxin fold InterPro
IPR002317 Seryl-tRNA synthetase, class IIa InterPro
IPR006195 Aminoacyl-tRNA synthetase, class II InterPro
G3DSA:3.30.930.10 no description Gene3D
IPR010987 Glutathione S-transferase, C-terminal-like InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003080768.1 SYS_HELAN Seryl-tRNA synthetase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 769
Identities = 392/608 (64%), Positives = 470/608 (77%), Gaps = 21/608 (3%)		 NCBI
Show Blast
XP_001419347.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 692
Identities = 342/435 (79%), Positives = 384/435 (88%), Gaps = 0/435 (0%)		 NCBI
Show Blast
XP_002501395.1 predicted protein [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 681
Identities = 337/465 (72%), Positives = 382/465 (82%), Gaps = 14/465 (3%)		 NCBI
Show Blast
XP_001692030.1 seryl-trna synthetase [Chlamydomonas reinhardtii]
Evalue: 4e-160 | Bitscore: 569
Identities = 280/460 (61%), Positives = 346/460 (75%), Gaps = 9/460 (2%)		 NCBI
Show Blast
XP_002306393.1 predicted protein [Populus trichocarpa]
Evalue: 9e-158 | Bitscore: 561
Identities = 272/441 (62%), Positives = 333/441 (76%), Gaps = 9/441 (2%)		 NCBI
Show Blast
XP_002950308.1 hypothetical protein VOLCADRAFT_81049 [Volvox carteri f. nagariensis]
Evalue: 2e-157 | Bitscore: 560
Identities = 282/454 (62%), Positives = 341/454 (75%), Gaps = 11/454 (2%)		 NCBI
Show Blast
ABR18398.1 unknown [Picea sitchensis]
Evalue: 3e-154 | Bitscore: 550
Identities = 268/438 (61%), Positives = 330/438 (75%), Gaps = 9/438 (2%)		 NCBI
Show Blast
O81983 Seryl-tRNA synthetase OS=Helianthus annuus PE=2 SV=1
Evalue: 1e-154 | Bitscore: 546
Identities = 265/444 (59%), Positives = 330/444 (74%), Gaps = 9/444 (2%)		 SwissP
Show Blast
XP_002284787.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 5e-153 | Bitscore: 546
Identities = 264/438 (60%), Positives = 331/438 (76%), Gaps = 9/438 (2%)		 NCBI
Show Blast
XP_002468332.1 hypothetical protein SORBIDRAFT_01g043930 [Sorghum bicolor]
Evalue: 1e-151 | Bitscore: 541
Identities = 264/446 (59%), Positives = 339/446 (76%), Gaps = 7/446 (2%)		 NCBI
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy01g04970
Redo Blast
CDS Length
1887 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy01g04970
Redo Blast
Protein Length
629 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_0.clus890.Contig1 Support ModelY More Info
EST IDSuperContig_0.clus14.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information