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Bathycoccus prasinos


Gene ID
Bathy01g04560
Locus
Bathy01g04560
Functional Description
glutathione S-transferase
Gene Type
protein-coding gene
Contig
bathy_chrom_01
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
glutathione S-transferase
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
PTHR11571 FAMILY NOT NAMED HMMPanther
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
IPR004046 Glutathione S-transferase, C-terminal InterPro
IPR017933 Glutathione S-transferase/chloride channel, C-terminal InterPro
IPR004045 Glutathione S-transferase, N-terminal InterPro
IPR012336 Thioredoxin-like fold InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001418826.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-51 | Bitscore: 206
Identities = 111/232 (48%), Positives = 150/232 (65%), Gaps = 22/232 (9%)
NCBI
Show Blast
XP_003080148.1 cleavage and polyadenylation specificity factor (ISS) [Ostreococcus tauri]
Evalue: 1e-47 | Bitscore: 194
Identities = 100/229 (44%), Positives = 137/229 (60%), Gaps = 15/229 (7%)
NCBI
Show Blast
XP_002181602.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 5e-35 | Bitscore: 152
Identities = 87/235 (37%), Positives = 139/235 (59%), Gaps = 17/235 (7%)
NCBI
Show Blast
EGB13035.1 hypothetical protein AURANDRAFT_18711 [Aureococcus anophagefferens]
Evalue: 9e-30 | Bitscore: 134
Identities = 79/228 (35%), Positives = 130/228 (57%), Gaps = 16/228 (7%)
NCBI
Show Blast
XP_002296788.1 glutathione s-transferase [Thalassiosira pseudonana CCMP1335]
Evalue: 3e-29 | Bitscore: 132
Identities = 74/205 (36%), Positives = 116/205 (57%), Gaps = 8/205 (4%)
NCBI
Show Blast
XP_003057935.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 5e-28 | Bitscore: 129
Identities = 76/209 (36%), Positives = 114/209 (55%), Gaps = 24/209 (11%)
NCBI
Show Blast
YP_524507.1 glutathione S-transferase-like [Rhodoferax ferrireducens T118]
Evalue: 6e-27 | Bitscore: 125
Identities = 87/234 (37%), Positives = 123/234 (53%), Gaps = 33/234 (14%)
NCBI
Show Blast
ABR14709.1 glutathione S-transferase [Chondrus crispus]
Evalue: 7e-27 | Bitscore: 125
Identities = 80/238 (34%), Positives = 130/238 (55%), Gaps = 34/238 (14%)
NCBI
Show Blast
CBA33556.1 hypothetical protein Csp_B19650 [Curvibacter putative symbiont of Hydra magnipapillata]
Evalue: 2e-26 | Bitscore: 123
Identities = 82/234 (35%), Positives = 127/234 (54%), Gaps = 33/234 (14%)
NCBI
Show Blast
ACV31082.1 putative glutathione S-transferase [Porphyra yezoensis]
Evalue: 2e-23 | Bitscore: 113
Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 32/230 (14%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy01g04560
Redo Blast
CDS Length
729 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy01g04560
Redo Blast
Protein Length
243 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a