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Bathycoccus prasinos


Gene ID
Bathy01g04000
Locus
Bathy01g04000
Functional Description
calmodulin
Gene Type
protein-coding gene
Contig
bathy_chrom_01
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
calmodulin
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

n/a
 

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
PTHR23050 FAMILY NOT NAMED HMMPanther
IPR011992 EF-hand-like domain InterPro
IPR002048 Calcium-binding EF-hand InterPro
IPR018248 EF-hand InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003074444.1 calmodulin mutant SYNCAM9 (ISS) [Ostreococcus tauri]
Evalue: 3e-58 | Bitscore: 228
Identities = 112/113 (99%), Positives = 112/113 (99%), Gaps = 0/113 (0%)		 NCBI
Show Blast
XP_001415905.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-57 | Bitscore: 225
Identities = 112/113 (99%), Positives = 112/113 (99%), Gaps = 0/113 (0%)		 NCBI
Show Blast
XP_003056131.1 calmodulin [Micromonas pusilla CCMP1545]
Evalue: 8e-56 | Bitscore: 219
Identities = 109/113 (96%), Positives = 111/113 (98%), Gaps = 0/113 (0%)		 NCBI
Show Blast
XP_002507130.1 calmodulin [Micromonas sp. RCC299]
Evalue: 2e-55 | Bitscore: 218
Identities = 108/113 (96%), Positives = 111/113 (98%), Gaps = 0/113 (0%)		 NCBI
Show Blast
AAD34415.1 calmodulin mutant SYNCAM9 [synthetic construct]
Evalue: 2e-55 | Bitscore: 218
Identities = 107/113 (95%), Positives = 111/113 (98%), Gaps = 0/113 (0%)		 NCBI
Show Blast
AAD34412.1 calmodulin mutant SYNCAM60 [synthetic construct]
Evalue: 3e-55 | Bitscore: 218
Identities = 107/113 (95%), Positives = 111/113 (98%), Gaps = 0/113 (0%)		 NCBI
Show Blast
AAD34409.1 calmodulin mutant SYNCAM5 [synthetic construct]
Evalue: 3e-55 | Bitscore: 218
Identities = 107/113 (95%), Positives = 111/113 (98%), Gaps = 0/113 (0%)		 NCBI
Show Blast
AAD34433.1 calmodulin mutant SYNCAM26 [synthetic construct]
Evalue: 3e-55 | Bitscore: 217
Identities = 107/113 (95%), Positives = 111/113 (98%), Gaps = 0/113 (0%)		 NCBI
Show Blast
1QTX Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide Complex
Evalue: 3e-55 | Bitscore: 217
Identities = 107/113 (95%), Positives = 111/113 (98%), Gaps = 0/113 (0%)		 NCBI
Show Blast
AAD34418.1 calmodulin mutant SYNCAM24 [synthetic construct]
Evalue: 3e-55 | Bitscore: 217
Identities = 107/113 (95%), Positives = 111/113 (98%), Gaps = 0/113 (0%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy01g04000
Redo Blast
CDS Length
342 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy01g04000
Redo Blast
Protein Length
114 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a