Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy01g03590
Locus
Bathy01g03590
Functional Description
glutamyl-tRNA synthetase
Gene Type
protein-coding gene
Contig
bathy_chrom_01
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
glutamyl-tRNA synthetase
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
cytoplasm

Molecular Function
1.
nucleotide binding

2.
aminoacyl-tRNA ligase activity

3.
ATP binding

Biological Process
1.
translation

2.
tRNA aminoacylation for protein translation

Protein Domains 


Domain IDDescriptionDatabase
IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site InterPro
IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain InterPro
IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain InterPro
IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain InterPro
IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain InterPro
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold InterPro
IPR000924 Glutamyl/glutaminyl-tRNA synthetase, class Ic InterPro
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
IPR004526 Glutamyl-tRNA synthetase, class Ic, archaeal/eukaryotic cytosolic InterPro
G3DSA:3.90.800.10 no description Gene3D
IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001415923.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 696
Identities = 332/518 (64%), Positives = 410/518 (79%), Gaps = 2/518 (0%)
NCBI
Show Blast
XP_003074488.1 putative glutamyl-tRNA synthetase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 665
Identities = 352/648 (54%), Positives = 442/648 (68%), Gaps = 37/648 (6%)
NCBI
Show Blast
XP_003056394.1 glutamyl-tRNA synthetase [Micromonas pusilla CCMP1545]
Evalue: 6e-170 | Bitscore: 602
Identities = 294/520 (57%), Positives = 380/520 (73%), Gaps = 5/520 (1%)
NCBI
Show Blast
XP_002958061.1 hypothetical protein VOLCADRAFT_77768 [Volvox carteri f. nagariensis]
Evalue: 5e-162 | Bitscore: 576
Identities = 299/523 (57%), Positives = 372/523 (71%), Gaps = 10/523 (2%)
NCBI
Show Blast
XP_001701416.1 gln-glu non-discriminatory tRNA synthetase [Chlamydomonas reinhardtii]
Evalue: 2e-161 | Bitscore: 574
Identities = 299/525 (57%), Positives = 368/525 (70%), Gaps = 11/525 (2%)
NCBI
Show Blast
ABR18375.1 unknown [Picea sitchensis]
Evalue: 1e-160 | Bitscore: 572
Identities = 307/654 (47%), Positives = 412/654 (63%), Gaps = 40/654 (6%)
NCBI
Show Blast
XP_002329985.1 predicted protein [Populus trichocarpa]
Evalue: 8e-160 | Bitscore: 568
Identities = 300/648 (46%), Positives = 412/648 (64%), Gaps = 27/648 (4%)
NCBI
Show Blast
XP_001761021.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-158 | Bitscore: 564
Identities = 277/516 (54%), Positives = 365/516 (71%), Gaps = 2/516 (0%)
NCBI
Show Blast
AAC13597.1 similar to aminoacyl-tRNA synthetases [Arabidopsis thaliana]
Evalue: 6e-158 | Bitscore: 562
Identities = 305/648 (47%), Positives = 404/648 (62%), Gaps = 32/648 (5%)
NCBI
Show Blast
NP_850874.1 glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative [Arabidopsis thaliana]
Evalue: 8e-158 | Bitscore: 562
Identities = 305/648 (47%), Positives = 404/648 (62%), Gaps = 32/648 (5%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy01g03590
Redo Blast
CDS Length
2253 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy01g03590
Redo Blast
Protein Length
751 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_0.clus685.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information
EST IDSuperContig_0.clus1122.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information