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Bathycoccus prasinos


Gene ID
Bathy01g02170
Locus
Bathy01g02170
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_01
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
calcium ion binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR018247 EF-Hand 1, calcium-binding site InterPro
IPR018249 EF-HAND 2 InterPro
IPR011992 EF-hand-like domain InterPro
IPR001429 P2X purinoreceptor InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
YP_004061432.1 hypothetical protein BpV1_002 [Bathycoccus sp. RCC1105 virus BpV1]
Evalue: 8e-114 | Bitscore: 415
Identities = 253/598 (42%), Positives = 357/598 (60%), Gaps = 57/598 (10%)		 NCBI
Show Blast
XP_002506621.1 predicted protein [Micromonas sp. RCC299]
Evalue: 2e-78 | Bitscore: 298
Identities = 195/591 (33%), Positives = 306/591 (52%), Gaps = 67/591 (11%)		 NCBI
Show Blast
XP_001421542.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 2e-67 | Bitscore: 261
Identities = 201/610 (33%), Positives = 309/610 (51%), Gaps = 67/610 (11%)		 NCBI
Show Blast
XP_003083450.1 unnamed protein product [Ostreococcus tauri]
Evalue: 2e-66 | Bitscore: 258
Identities = 197/596 (33%), Positives = 296/596 (50%), Gaps = 69/596 (12%)		 NCBI
Show Blast
XP_001415390.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 3e-47 | Bitscore: 194
Identities = 175/619 (28%), Positives = 287/619 (46%), Gaps = 86/619 (14%)		 NCBI
Show Blast
XP_002505784.1 predicted protein [Micromonas sp. RCC299]
Evalue: 7e-24 | Bitscore: 117
Identities = 148/610 (24%), Positives = 250/610 (41%), Gaps = 135/610 (22%)		 NCBI
Show Blast
XP_003055162.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0001 | Bitscore: 53
Identities = 107/409 (26%), Positives = 158/409 (39%), Gaps = 94/409 (23%)		 NCBI
Show Blast
YP_819385.1 alanine racemase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
Evalue: 0.69 | Bitscore: 40
Identities = 53/183 (29%), Positives = 72/183 (39%), Gaps = 46/183 (25%)		 NCBI
Show Blast
ZP_03913500.1 alanine racemase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
Evalue: 0.69 | Bitscore: 40
Identities = 50/181 (28%), Positives = 69/181 (38%), Gaps = 42/181 (23%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy01g02170
Redo Blast
CDS Length
1788 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy01g02170
Redo Blast
Protein Length
596 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_0.clus83.Contig1 Support ModelN More Info
CommentEST is mapped on the opposite strand of the predicted model
EST IDSuperContig_0.clus719.Contig3 Support ModelY More Info
EST IDSuperContig_0.clus719.Contig2 Support ModelY More Info