Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy01g01240
Locus
Bathy01g01240
Functional Description
VIC family transporter: calcium ion channel
Gene Type
protein-coding gene
Contig
bathy_chrom_01
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
VIC family transporter: calcium ion channel
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
SSF81324 Voltage-gated potassium channels superfamily
PTHR10037 VOLTAGE-GATED CATION CHANNEL (CALCIUM AND SODIUM) HMMPanther
IPR018249 EF-HAND 2 InterPro
IPR005821 Ion transport InterPro
G3DSA:1.20.120.350 no description Gene3D
IPR000048 IQ motif, EF-hand binding site InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_001415426.1 VIC family transporter: calcium ion channel [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1013
Identities = 704/1691 (42%), Positives = 975/1691 (58%), Gaps = 200/1691 (12%)		 NCBI
Show Blast
XP_003074195.1 sodium channel (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 956
Identities = 662/1593 (42%), Positives = 905/1593 (57%), Gaps = 173/1593 (11%)		 NCBI
Show Blast
XP_002507789.1 voltage-gated ion channel superfamily [Micromonas sp. RCC299]
Evalue: 4e-58 | Bitscore: 232
Identities = 171/656 (26%), Positives = 321/656 (49%), Gaps = 40/656 (6%)		 NCBI
Show Blast
XP_002736682.1 PREDICTED: sodium channel, voltage-gated, type I, alpha-like [Saccoglossus kowalevskii]
Evalue: 7e-57 | Bitscore: 228
Identities = 191/724 (26%), Positives = 352/724 (49%), Gaps = 73/724 (10%)		 NCBI
Show Blast
XP_002502721.1 voltage-gated ion channel superfamily [Micromonas sp. RCC299]
Evalue: 2e-56 | Bitscore: 227
Identities = 178/667 (27%), Positives = 321/667 (48%), Gaps = 53/667 (8%)		 NCBI
Show Blast
XP_002425167.1 sodium channel protein type 2 subunit alpha, putative [Pediculus humanus corporis]
Evalue: 4e-56 | Bitscore: 226
Identities = 176/591 (30%), Positives = 302/591 (51%), Gaps = 45/591 (8%)		 NCBI
Show Blast
Q9W0Y8 Sodium channel protein 60E OS=Drosophila melanogaster GN=NaCP60E PE=2 SV=5
Evalue: 3e-57 | Bitscore: 225
Identities = 156/590 (26%), Positives = 274/590 (46%), Gaps = 39/590 (6%)		 SwissP
Show Blast
XP_003062267.1 voltage-gated ion channel superfamily [Micromonas pusilla CCMP1545]
Evalue: 6e-56 | Bitscore: 225
Identities = 185/685 (27%), Positives = 329/685 (48%), Gaps = 56/685 (8%)		 NCBI
Show Blast
XP_395121.3 PREDICTED: similar to Na channel protein 60E CG9071-PB, isoform B [Apis mellifera]
Evalue: 1e-55 | Bitscore: 224
Identities = 180/651 (28%), Positives = 314/651 (48%), Gaps = 51/651 (8%)		 NCBI
Show Blast
XP_002508803.1 voltage-gated ion channel superfamily [Micromonas sp. RCC299]
Evalue: 2e-55 | Bitscore: 223
Identities = 175/645 (27%), Positives = 325/645 (50%), Gaps = 33/645 (5%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy01g01240
Redo Blast
CDS Length
5424 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy01g01240
Redo Blast
Protein Length
1808 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a