Logo bioIT Logo VIB Logo Ugent Logo ElixirBE
Contact:
Bioinformatics Gent
Principal Investigator:

ORCAE Technical Support:

Bathycoccus prasinos


Gene ID
Bathy01g00590
Locus
Bathy01g00590
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_01
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

Sorry, only history comparison allowed for non logged in users!! Compare this version with :
Go!

Link Out  

pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
n/a
Biological Process
1.
cell redox homeostasis

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
PTHR18929 FAMILY NOT NAMED HMMPanther
IPR013766 Thioredoxin domain InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002500962.1 protein disulfide isomerase [Micromonas sp. RCC299]
Evalue: 1e-46 | Bitscore: 189
Identities = 90/157 (57%), Positives = 114/157 (73%), Gaps = 0/157 (0%)
NCBI
Show Blast
XP_003074130.1 Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) (ISS) [Ostreococcus tauri]
Evalue: 2e-34 | Bitscore: 148
Identities = 67/101 (66%), Positives = 77/101 (76%), Gaps = 0/101 (0%)
NCBI
Show Blast
EGB07854.1 selenoprotein [Aureococcus anophagefferens]
Evalue: 3e-18 | Bitscore: 94
Identities = 56/164 (34%), Positives = 83/164 (51%), Gaps = 13/164 (8%)
NCBI
Show Blast
XP_002503037.1 predicted protein [Micromonas sp. RCC299]
Evalue: 1e-17 | Bitscore: 92
Identities = 47/113 (42%), Positives = 70/113 (62%), Gaps = 3/113 (3%)
NCBI
Show Blast
EGB08353.1 hypothetical protein AURANDRAFT_78109 [Aureococcus anophagefferens]
Evalue: 1e-17 | Bitscore: 92
Identities = 52/125 (42%), Positives = 72/125 (58%), Gaps = 3/125 (2%)
NCBI
Show Blast
XP_002504865.1 predicted protein [Micromonas sp. RCC299]
Evalue: 3e-17 | Bitscore: 91
Identities = 52/126 (41%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
NCBI
Show Blast
XP_002289024.1 predicted protein [Thalassiosira pseudonana CCMP1335]
Evalue: 1e-15 | Bitscore: 86
Identities = 49/129 (38%), Positives = 73/129 (57%), Gaps = 13/129 (10%)
NCBI
Show Blast
XP_003060444.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 2e-15 | Bitscore: 85
Identities = 49/126 (39%), Positives = 73/126 (58%), Gaps = 3/126 (2%)
NCBI
Show Blast
XP_003078843.1 Thioredoxin/protein disulfide isomerase (ISS) [Ostreococcus tauri]
Evalue: 2e-14 | Bitscore: 82
Identities = 58/148 (39%), Positives = 79/148 (53%), Gaps = 22/148 (15%)
NCBI
Show Blast
Q50KB1 Protein disulfide-isomerase-like protein EhSep2 OS=Emiliania huxleyi GN=SEP2 PE=1 SV=2
Evalue: 2e-15 | Bitscore: 81
Identities = 57/151 (37%), Positives = 79/151 (52%), Gaps = 12/151 (7%)
SwissP
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy01g00590
Redo Blast
CDS Length
495 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy01g00590
Redo Blast
Protein Length
165 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a