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Bathycoccus prasinos


Gene ID
Bathy01g00520
Locus
Bathy01g00520
Functional Description
predicted protein
Gene Type
protein-coding gene
Contig
bathy_chrom_01
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
predicted protein
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
ATP binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
G3DSA:3.40.50.300 no description Gene3D
IPR018249 EF-HAND 2 InterPro
IPR011992 EF-hand-like domain InterPro
SSF52540 P-loop containing nucleoside triphosphate hydrolases superfamily
SSF47473 EF-hand superfamily
IPR005654 ATPase, AFG1-like InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_003074122.1 Predicted ATPase (ISS) [Ostreococcus tauri]
Evalue: 4e-102 | Bitscore: 377
Identities = 212/426 (50%), Positives = 283/426 (66%), Gaps = 26/426 (6%)		 NCBI
Show Blast
XP_003056503.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 6e-91 | Bitscore: 340
Identities = 246/613 (40%), Positives = 324/613 (53%), Gaps = 108/613 (18%)		 NCBI
Show Blast
XP_001415393.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 7e-83 | Bitscore: 313
Identities = 168/320 (53%), Positives = 213/320 (67%), Gaps = 20/320 (6%)		 NCBI
Show Blast
XP_002500542.1 predicted protein [Micromonas sp. RCC299]
Evalue: 2e-78 | Bitscore: 298
Identities = 179/383 (47%), Positives = 234/383 (61%), Gaps = 37/383 (10%)		 NCBI
Show Blast
CBN80128.1 conserved unknown protein [Ectocarpus siliculosus]
Evalue: 1e-61 | Bitscore: 242
Identities = 176/528 (33%), Positives = 272/528 (52%), Gaps = 48/528 (9%)		 NCBI
Show Blast
XP_002966694.1 hypothetical protein SELMODRAFT_1847 [Selaginella moellendorffii]
Evalue: 2e-56 | Bitscore: 224
Identities = 157/442 (36%), Positives = 228/442 (52%), Gaps = 67/442 (15%)		 NCBI
Show Blast
XP_001876564.1 predicted protein [Laccaria bicolor S238N-H82]
Evalue: 3e-53 | Bitscore: 214
Identities = 144/449 (32%), Positives = 227/449 (51%), Gaps = 63/449 (14%)		 NCBI
Show Blast
XP_002192924.1 PREDICTED: similar to lactation elevated 1 (predicted) [Taeniopygia guttata]
Evalue: 1e-52 | Bitscore: 212
Identities = 143/444 (32%), Positives = 215/444 (48%), Gaps = 71/444 (16%)		 NCBI
Show Blast
XP_419799.2 PREDICTED: similar to lactation elevated 1 [Gallus gallus]
Evalue: 6e-52 | Bitscore: 210
Identities = 126/340 (37%), Positives = 180/340 (53%), Gaps = 35/340 (10%)		 NCBI
Show Blast
NP_665686.2 lactation elevated protein 1 [Mus musculus] sp|Q3V384.1|LACE1_MOUSE RecName: Full=Lactation elevated protein 1
Evalue: 8e-52 | Bitscore: 209
Identities = 138/382 (36%), Positives = 194/382 (51%), Gaps = 42/382 (11%)		 NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy01g00520
Redo Blast
CDS Length
1998 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy01g00520
Redo Blast
Protein Length
666 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_0.clus892.Contig1 Support ModelY More Info
EST IDSuperContig_0.clus984.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information