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Bathycoccus prasinos


Gene ID
Bathy01g00030
Locus
Bathy01g00030
Functional Description
glutathione S-transferase
Gene Type
protein-coding gene
Contig
bathy_chrom_01
Last Modified On
12 July 2011 21h39
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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pico-PLAZA - lookup this gene in the PLAZA resource

Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
glutathione S-transferase
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR012335 Thioredoxin fold InterPro
IPR010987 Glutathione S-transferase, C-terminal-like InterPro
IPR004046 Glutathione S-transferase, C-terminal InterPro
IPR017933 Glutathione S-transferase/chloride channel, C-terminal InterPro
IPR004045 Glutathione S-transferase, N-terminal InterPro
PTHR11260 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_002507387.1 glutathione s-transferase [Micromonas sp. RCC299]
Evalue: 6e-121 | Bitscore: 439
Identities = 243/482 (50%), Positives = 298/482 (62%), Gaps = 25/482 (5%)
NCBI
Show Blast
XP_001690194.1 glutathione S-transferase [Chlamydomonas reinhardtii]
Evalue: 5e-111 | Bitscore: 406
Identities = 226/448 (50%), Positives = 282/448 (63%), Gaps = 30/448 (7%)
NCBI
Show Blast
XP_003074072.1 COG0625: Glutathione S-transferase (ISS) [Ostreococcus tauri]
Evalue: 1e-109 | Bitscore: 401
Identities = 218/445 (49%), Positives = 293/445 (66%), Gaps = 17/445 (4%)
NCBI
Show Blast
EFN53294.1 hypothetical protein CHLNCDRAFT_58587 [Chlorella variabilis]
Evalue: 3e-97 | Bitscore: 360
Identities = 207/423 (49%), Positives = 261/423 (62%), Gaps = 16/423 (4%)
NCBI
Show Blast
XP_001415712.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 4e-95 | Bitscore: 353
Identities = 202/455 (44%), Positives = 268/455 (59%), Gaps = 59/455 (13%)
NCBI
Show Blast
XP_003058542.1 intracellular chloride channel family [Micromonas pusilla CCMP1545]
Evalue: 3e-92 | Bitscore: 343
Identities = 192/449 (43%), Positives = 265/449 (59%), Gaps = 28/449 (6%)
NCBI
Show Blast
XP_002185767.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Evalue: 2e-89 | Bitscore: 334
Identities = 197/429 (46%), Positives = 254/429 (59%), Gaps = 26/429 (6%)
NCBI
Show Blast
CBJ25907.1 putative Glutathione S-transferase [Ectocarpus siliculosus]
Evalue: 7e-88 | Bitscore: 329
Identities = 214/470 (46%), Positives = 265/470 (56%), Gaps = 42/470 (9%)
NCBI
Show Blast
XP_003080812.1 Glutathione S-transferase (ISS) [Ostreococcus tauri]
Evalue: 1e-86 | Bitscore: 325
Identities = 194/469 (41%), Positives = 269/469 (57%), Gaps = 42/469 (9%)
NCBI
Show Blast
XP_002501755.1 intracellular chloride channel family [Micromonas sp. RCC299]
Evalue: 4e-84 | Bitscore: 317
Identities = 186/450 (41%), Positives = 263/450 (58%), Gaps = 28/450 (6%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

Alternative Models  

n/a
 

CDS  

Locus ID
Bathy01g00030
Redo Blast
CDS Length
1398 nucleotides
CDS Sequence

Protein 

Locus ID
Bathy01g00030
Redo Blast
Protein Length
466 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView|View in Artemini


EST IDSuperContig_0.clus1031.Contig1 Support ModelY More Info
CommentEST is non-spliced and has no reliable strand information