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1988

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1993

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1996

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1998

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1999

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2000

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2001

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2002

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• L.J. van 't Veer and H. Daiand M.J. van de Vijver and Y.D. He and A.A.M. Hart and M. Mao and H.L. Peterse and K. van der Kooy and M.J. Marton and A.T. Witteveen and R.M. Schreiber and R.M. Kerkhoven and C. Roberts and P.S. Linsley and R. Bernards and S.H. Friend (2002) "Gene expression profiling predicts clinical outcome of breast cancer." Nature, Vol. 415, pages 530-535

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2003

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• S. Canu and Y. Grandvalet and A. Rakotomamonjy (2003) "SVM and Kernel Methods Matlab Toolbox." In Perception Systèmes et Information, INSA de Rouen, Rouen, France

• W. Daelemans and V. Hoste and F. De Meulder and B. Naudts (2003) "Combined Optimization of Feature Selection and Algorithm Parameter Interaction in Machine Learning of Language." In Proceedings of the 14th European Conference on Machine Learning (ECML-2003), pages 84-95.

• P.B. Dobrokhotov and C. Goutte and A.L. Veuthey and E. Gaussier (2003) "Combining NLP and probabilistic categorisation for document and term selection for Swiss-Prot medical annotation." Bioinformatics, Vol. 19, pages 91-94

• G. Forman (2003) "An Extensive Empirical Study of Feature Selection Metrics for Text Classification." Journal of Machine Learning Research, Vol. 3, pages 1289-1305

• Y. Saeys and S. Degroeve and D. Aeyels and Y. Van de Peer and P. Rouzé (2003) "Fast feature selection using a simple Estimation of Distribution Algorithm: a case study on splice site prediction." Bioinformatics, Vol. 19, Nr. 2, pages 179-188

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• B. Wu and T. Abbott and D. Fishman and W. McMurray and G. Mor and K. Stone and D. Ward and K. Williams and H. Zhao (2003) "Comparison of statistical methods for classification of ovarian cancer using mass spectometry data." Bioinformatics, Vol. 19, Nr. 13, pages 1636-1643

2004

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• Y. Saeys (2004) "Feature selection for classification of nucleic acid sequences." PhD thesis, Ghent University.

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• H. Jiang and Y. Deng and H.-S. Cheng and L. Tao and Q. Sha and J. Chen and C.-J. Tsai and S. Zhang (2004) "Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes." BMC Bioinformatics, Vol. 5, Nr. 81

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• R. Blanco and P. Larrañaga and I. Inza and B. Sierra (2004) "Gene selection for cancer classification using wrapper approaches." International Journal of Pattern Recognition and Artificial Intelligence, Vol. 18, Nr. 8

• U.M. Braga-Neto and E.R. Dougherty (2004) "Is cross-validation valid for small-sample microarray classification?." Bioinformatics, Vol. 20, Nr. 3, pages 374-380

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• L. Li and D.M. Umbach and P. Terry and J.A. Taylor (2004) "Applications of the GA/KNN method to SELDI proteomics data." Bioinformatics, Vol. 20, Nr. 10, pages 1638-1640

• R. Tibshirani and T. Hastie and B. Narasimhan and S. Soltys and G. Shi and A. Koong and Q-T. Le (2004) "Sample classification from protein mass spectrometry, by `peak probability contrast'." Bioinformatics, Vol. 20, Nr. 17, pages 3034-3044

• J. Prados and A. Kalousis and J-C. Sánchez and L. Allard and O. Carrette and M. Hilario (2004) "Mining mass-spectra for diagnosis and biomarker discovery of cerebral accidents." Proteomics, Vol. 4, Nr. 8, pages 2320-2332

• K. Jong and E. Marchiori and M. Sebag and A. van der Vaart (2004) "Feature selection in proteomic pattern data with support vector machines." In Proceedings of the IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, pages 41-48.

• L. Li and D.M. Umbach and P. Terry and J.A. Taylor (2004) "Application of the GA/KNN method to SELDI proteomics data." Bioinformatics, Vol. 20, Nr. 10, pages 1638-1640

• C.S. Carlson and M.A. Eberle and M.J. Rieder and Q. Yi and L. Kruglyak and D.A. Nickerson (2004) "Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium." American Journal of Human Genetics, Vol. 74, pages 106-120

• Z. Lin and R. B. Altman (2004) "Finding haplotype tagging SNPs by use of principal components analysis." American Journal of Human Genetics, Vol. 73, pages 850-861

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• S.C. Shah and A. Kusiak (2004) "Data mining and genetic algorithm based gene/SNP selection." Artificial Intelligence in Medicine, Vol. 31, pages 183-196

2005

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• X. Yan and M. Deng and W.K. Fung and M. Qian (2005) "Detecting differentially expressed genes by relative entropy." Journal of Theoretical Biology, Vol. 234, Nr. 3, pages 395-402

• J.J. Liu and G. Cutler and W. Li and Z. Pan and S. Peng and T. Hoey and L. Chen and X.B. Ling (2005) "Multiclass cancer classification and biomarker discovery using GA-based algorithms." Bioinformatics, Vol. 21, Nr. 11, pages 2691-2697

• X. Liu and A. Krishnan and and A. Mondry (2005) "An entropy-based gene selection method for cancer classification using microarray data." BMC Bioinformatics, Vol. 6, Nr. 76

• A. Al-Shahib and R. Breitling and D. Gilbert (2005) "Feature selection and the class imbalance problem in predicting protein function from sequence." Applied Bioinformatics, Vol. 4, Nr. 3, pages 195-203

• L. Buturovic (2005) "PCP: a program for supervised classification of gene expression profiles." Bioinformatics, Vol. 22, Nr. 2, pages 245-247

• A.M. Cohen and W.R. Hersch (2005) "A survey of current work in biomedical text mining." Briefings in Bioinformatics, Vol. 6, Nr. 1, pages 57-71

• P.C. Conilione and D. Wang (2005) "A Comparative Study on Feature Selection for E.coli Promoter Recognition." International Journal of Information Technology, Vol. 11, pages 54-66

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• H. Liu and L. Yu (2005) "Toward Integrating Feature Selection Algorithms for Classification and Clustering." IEEE Transactions on Knowledge and Data Engineering, Vol. 17, Nr. 4, pages 491-502

• S. Scheid and R. Spang (2005) "twilight; a Bioconductor package for estimating the local false discovery rate." Bioinformatics, Vol. 21, Nr. 12, pages 2921-2922

• Witten,I.H. and Frank,E. (2005) "Data Mining: Practical Machine Learning Tools and Techniques, 2nd Edition." , Morgan Kaufmann, San Francisco

• A. Statnikov and C.F. Aliferis and I. Tsamardinos and D. Hardin and S. Levy (2005) "A comprensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis." Bioinformatics, Vol. 21, Nr. 5, pages 631-643

• J.W. Lee and J.B. Loo and M. Park and S.H. Song (2005) "An extensive comparison of recent classification tools applied to microarray data." Computational Statistics and Data Analysis, Vol. 48, pages 869-885

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• K.Y. Yeung and R.E. Bumgarner and A.E. Raftery (2005) "Bayesian model averaging: development of an improved multi-class, gene selection and classification tool for microarray data." Bioinformatics, Vol. 21, Nr. 10, pages 2394-2402

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• S. Ma and J. Huang (2005) "Regularized ROC method for disease classification and biomarker selection with microarray data." Bioinformatics, Vol. 21, Nr. 24, pages 4356-4362

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• A. Molinaro and R. Simon and R.M. Pfeiffer (2005) "Prediction error estimation: a comparison of resampling methods." Bioinformatics, Vol. 21, Nr. 15, pages 3301-3307

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• J.S. Yu and S. Ongarello and R. Fiedler and X.W. Chen and G. Toffolo and C. Cobelli and Z. Trajanoski (2005) "Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectometry data." Bioinformatics, Vol. 21, Nr. 12, pages 2200-2209

• P. Geurts and M. Fillet and D. de Seny and M-A. Meuwis and M. Malaise and M-P. Merville and L. Wehenkel (2005) "Proteomic mass spectra classification using decision tree based ensemble methods." Bioinformatics, Vol. 21, Nr. 15, pages 3138-3145

• H.W. Ressom and R.S. Varghese and M. Abel-Hamid and S. Abdel-Latif Eissa and D. Saha and L. Goldman and E.F. Petricoin and T.P. Conrads and T.D. Veenstra and C.A. Loffredo and R. Goldman (2005) "Analysis of mass spectral serum profiles for biomarker selection." Bioinformatics, Vol. 21, Nr. 21, pages 4039-4045

• J.S. Yu and X.W. Chen (2005) "Bayesian neural network approaches to ovarian cancer identification from high-resolution mass spectometry data." Bioinformatics, Vol. 21, Nr. Suppl., pages i487-i494

• X. Li and S. Rao and W.Zhang and G. Zheng and W. Jiang and L. Du (2005) "Large-scale ensemble decision analysis of sib-pair IBD profiles for identification of the relevant molecular signatures for alcoholism." In Lecture Notes in Computer Science 3614, pages 1184-1189., Springer

• B. Gong and Z. Guo and J. Li and G. Zhu and S. Lv and S. Rao and X. Li (2005) "Application of genetic algorithm -- support vector machine hybrid for prediction of clinical phenotypes based on geneome-wide SNP profiles of sib pairs." In Lecture Notes in Computer Science 3614, pages 830-835., Springer

• E. Halperin and G. Kimmel and R. Shamir (2005) "Tag SNP selection in genotype data for maximizing SNP prediction accuracy." Bioinformatics, Vol. 21, Nr. suppl., pages i195-203

2006

• K. Yang and Z. Cai and J. Li and G. Lin (2006) "A stable gene selection in microarray data analysis." BMC Bioinformatics, Vol. 7, Nr. 228

• T-C. Lin and R-S. Liu and C-Y. Chen and Y-T. Chao and S-Y. Chen (2006) "Pattern classification in DNA microarray data of multiple tumor types." Pattern Recognition, Vol. 39, Nr. 12, pages 2426-2438.

• S. Niijima and S. Kuhara (2006) "Gene subset selection in kernel-induced feature space." Pattern Recognition Letters, Vol. 27, pages 1884-1892

• S. Datta and L.M. DePadilla (2006) "Feature selection and machine learning with mass spectrometry data for distinguishing cancer and non-cancer samples." Statistical Methodology, Vol. 3, Nr. 1, pages 79-92

• B. Han and Z. Obradovic and Z.Z. Hu and C.H. Wu and S. Vucetic (2006) "Substring selection for biomedical document classification." Bioinformatics, Vol. 22, Nr. 17, pages 2136-2142

• L.J. Jensen and J. Saric and P. Bork (2006) "Literature mining for the biologist: from information retrieval to biological discovery." Nature Reviews Genetics, Vol. 7, Nr. 2, pages 119-129

• S.K. Kim and J.W. Nam and J.K. Rhee and W.J. Lee and B.T. Zhang (2006) "miTarget: microRNA target gene prediction using a support vector machine." BMC Bioinformatics, Vol. 7, Nr. 411

• J.T. Leek and E. Monsen and A.R. Dabney and J.D. Storey (2006) "EDGE: extraction and analysis of differential gene expression." Bioinformatics, Vol. 22, Nr. 4, pages 507-508

• T.M. Phuong and Z. Lin and R.B. Altman (2006) "Choosing SNPs using feature selection." Journal of Bioinformatics and Computational Biology, Vol. 4, Nr. 2, pages 241-57

• V. Trevino and F. Falciani (2006) "GALGO: an R package for multivariate variable selection using genetic algorithms." Bioinformatics, Vol. 22, Nr. 9, pages 1154-1156

• P. Jafari and F. Azuaje (2006) "An assessment of recently published gene expression data analyses: reporting experimental design and statistical factors." BMC Medical Informatics and Decision Making, Vol. 6, Nr. 1, pages 27

• P. Pavlidis and P. Poirazi (2006) "Individualized markers optimize class prediction of microarray data." BMC Bioinformatics, Vol. 7, Nr. 1, pages 345

• S. Niijima and S. Kuhara (2006) "Gene subset selection in kernel-induced feature space." Pattern Recognition Letters, Vol. 27, pages 1884-1892

• R. Díaz-Uriarte and S. Alvarez de Andrés (2006) "Gene selection and classification of microarray data using random forest." BMC Bioinformatics, Vol. 7, Nr. 3

• H. Mamitsuka (2006) "Selecting features in microarray classification using ROC curves." Pattern Recognition, Vol. 39, pages 2393-2404

• O. Gevaert and F. De Smet and D. Timmerman and Y. Moreau and B. De Moor (2006) "Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks." Bioinformatics, Vol. 22, Nr. 14, pages e184-e190

• R. Ruiz and J.C. Riquelme and J.S. Aguilar-Ruiz (2006) "Incremental wrapper-based gene selection from microarray data for cancer classification." Pattern Recognition, Vol. 39, pages 2383-2392

• M.S. Pepe and T. Cai and G. Longton (2006) "Combining predictors for classification using the area under the ROC curve." Biometrics, Vol. 62, Nr. 1, pages 221–229

• R.J. Fox and M.W. Dimmic (2006) "A two-sample Bayesian t-test for microarray data." BMC Bioinformatics, Vol. 7, Nr. 1, pages 126

• C. Sima and E.R. Dougherty (2006) "What should be expected from feature selection in small-sample settings." Bioinformatics, Vol. 22, Nr. 19, pages 2430-2436

• M. Hilario and A. Kalousis and C. Pellegrini and M. Muller (2006) "Processing and classification of protein mass spectra." Mass Spectometry Reviews, Vol. 25, Nr. 3, pages 409-449

• H. Shin and M.K. Markey (2006) "A machine learning perspective on the development of clinical decision support systems utilizing mass spectra of blood samples." Journal of Biomedical Informatics, Vol. 39, pages 227-248

• G. Bhanot and G. Alexe and B. Venkataraghavan and A.J. Levine (2006) "A robust meta-classification strategy for cancer detection from MS data." Proteomics, Vol. 6, Nr. 2, pages 592-604

• X. Zhang and X. Liu and Q. Shi and X-Q. Xu and H-C.E. Leung and L.N. Harris and J.D. Iglehart and A. Miron and J.S. Liu and W.H. Wong (2006) "Recursive SVM feature selection and sample classification for mass-spectometry and microarray data." BMC Bioinformatics, Vol. 7, Nr. 197

• A. Ploner and S. Calza and Arief Gusnanto and Yudi Pawitan (2006) "Multidimensional local false discovery rate for microarray studies." Bioinformatics, Vol. 22, Nr. 5, pages 556-565

• J. Gould and G. Getz and S. Monti and M. Reich and J.P. Mesirov (2006) "Comparative gene marker selection suite." Bioinformatics, Vol. 22, Nr. 15, pages 1924-1925

• R. Varshavsky and A. Gottlieb and M. Linial and D. Horn (2006) "Novel Unsupervised Feature Filtering of Biological Data." Bioinformatics, Vol. 22, Nr. 14, pages e507-513

• P. H. Lee and H. Shatkay (2006) "BNTagger: improved tagging SNP selection using Bayesian networks." Bioinformatics, Vol. 22, Nr. 14, pages e211-e219

• Y. Wang and F. Makedon and J. Pearlman (2006) "Tumor classification based on DNA copy number aberrations determined using SNPS arrays." Oncology Reports, Vol. 5, pages 1057-1059

• J. He and A. Zelikovsky (2006) "MLR-tagging: informative SNP selection for unphased genotypes based on multiple linear regression." Bioinformatics, Vol. 22, Nr. 20, pages 2558-2561

2007

• S. Ma and X. Song and J. Huang (2007) "Supervised group Lasso with applications to microarray data analysis." BMC Bioinformatics, Vol. 8, Nr. 60

• J.J. Chen and C-A. Tsai and S. Tzeng and C-H. Chen (2007) "Gene selection with multiple ordering criteria." BMC Bioinformatics, Vol. 8, Nr. 47

• S. Shah and A. Kusiak (2007) "Cancer gene search with data-mining and genetic algorithms." Computers in Biology and Medicine, Vol. 37, Nr. 2, pages 251-261

• I. Medina and D. Montaner and J. Tárraga and J. Dopazo (2007) "Prophet, a web-based tool for class prediction using microarray data." Bioinformatics, Vol. 23, Nr. 3, pages 390-391

• Y. Saeys and P. Rouzé and Y. Van de Peer (2007) "In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi, and protists." Bioinformatics, Vol. 23, Nr. 4, pages 414-420

• M. Xiong and X. Fang and J. Zhao (2007) "Biomarker identification by feature wrappers." Genome Research, Vol. 11, Nr. 11, pages 1878-1887

• H.W. Ressom and R.S. Varghese and S.K. Drake and G.L. Hortin and M. Abel-Hamid and C.A. Loffredo and R. Goldman (2007) "Peak selection from MALDI-TOF mass spectra using ant colony optimization." Bioinformatics, Vol. 23, Nr. 5, pages 619-626

• K.R. Coombes and K.A. Baggerly and J.S. Morris (2007) "Pre-processing mass spectometry data." In Fundamentals of Data Mining in Genomics and Proteomics, pages 79-99., Kluwer

• P.C. Sham and S.I. Ao and J.S.H. Kwan and P. Kao and F. Cheung and P.Y. Fong and M.K. Ng (2007) "Combining functional and linkage disequilibrium information in the selection of tag SNPs." Bioinformatics, Vol. 23, Nr. 1, pages 129-131