General tools


Some prediction software was only available via the Web and do not allow to process a set of sequences, thus we developed some Perl scripts to submit our sequences. These Perl scripts need libwww-perl (http://www.linpro.no/lwp/).

  1. name of FASTA sequence files MUST START with seq## (where ## is the contig number on 2 digits) and have .tfa as file extension (ie: seq01ac002332g14g15.tfa)
  2. a Data.list file is a text file which contains per line the name of a contig (ie: seq01) and the length of the sequence, separated by a tabulation.

If you encounter a problem, contact Patrice Déhais